Variant report

Variant	rs73501301
Chromosome Location	chr9:104275474-104275475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs57958908	0.83[AFR][1000 genomes]
rs58719526	0.83[AFR][1000 genomes]
rs58723462	0.83[AFR][1000 genomes]
rs59346028	0.83[AFR][1000 genomes]
rs59775931	0.83[AFR][1000 genomes]
rs60076240	0.87[AFR][1000 genomes]
rs60850343	1.00[AFR][1000 genomes]
rs73501292	0.82[AFR][1000 genomes]
rs73501295	1.00[AFR][1000 genomes]
rs73501298	1.00[AFR][1000 genomes]
rs73503226	0.87[AFR][1000 genomes]
rs73503231	0.87[AFR][1000 genomes]
rs73503239	0.83[AFR][1000 genomes]
rs73503242	0.83[AFR][1000 genomes]
rs73503247	0.83[AFR][1000 genomes]
rs73503252	0.83[AFR][1000 genomes]
rs73503255	0.83[AFR][1000 genomes]
rs73503262	0.83[AFR][1000 genomes]
rs73505278	0.83[AFR][1000 genomes]
rs73505281	0.83[AFR][1000 genomes]
rs73505301	0.83[AFR][1000 genomes]
rs73509320	0.83[AFR][1000 genomes]
rs73509336	0.83[AFR][1000 genomes]
rs73509395	0.83[AFR][1000 genomes]
rs73657957	0.82[AFR][1000 genomes]
rs73659520	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv893627	chr9:104268342-104334333	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104263200-104275600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:104270800-104276000	Weak transcription	Adipose Nuclei	Adipose
3	chr9:104271000-104276000	Weak transcription	NHEK	skin
4	chr9:104271600-104276000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:104272200-104276400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:104273400-104277400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:104273600-104275600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr9:104273800-104275800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:104274000-104275600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:104274000-104275800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr9:104274000-104277200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:104274000-104277200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:104274000-104277200	Enhancers	Osteobl	bone
14	chr9:104274000-104277400	Enhancers	NHDF-Ad	bronchial
15	chr9:104274000-104277600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr9:104274000-104277600	Enhancers	NHLF	lung
17	chr9:104274000-104277800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr9:104274200-104277200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr9:104274200-104277200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:104274200-104277200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr9:104274600-104275800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:104274600-104277200	Enhancers	HSMM	muscle
23	chr9:104274600-104277600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr9:104274800-104275600	Enhancers	Fetal Heart	heart
25	chr9:104274800-104276000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:104274800-104276000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:104275000-104276800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:104275000-104276800	Weak transcription	Pancreas	Pancrea
29	chr9:104275400-104275600	Enhancers	Aorta	Aorta
30	chr9:104275400-104277200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr9:104275400-104277400	Enhancers	Brain Anterior Caudate	brain
32	chr9:104275400-104277600	Enhancers	H1 Cell Line	embryonic stem cell

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