Variant report

Variant	rs73505281
Chromosome Location	chr9:104345196-104345197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs57958908	1.00[AFR][1000 genomes]
rs58719526	1.00[AFR][1000 genomes]
rs58723462	1.00[AFR][1000 genomes]
rs59346028	1.00[AFR][1000 genomes]
rs59775931	1.00[AFR][1000 genomes]
rs60076240	0.95[AFR][1000 genomes]
rs60850343	0.83[AFR][1000 genomes]
rs73501295	0.83[AFR][1000 genomes]
rs73501298	0.83[AFR][1000 genomes]
rs73501301	0.83[AFR][1000 genomes]
rs73503226	0.95[AFR][1000 genomes]
rs73503231	0.95[AFR][1000 genomes]
rs73503239	1.00[AFR][1000 genomes]
rs73503242	1.00[AFR][1000 genomes]
rs73503247	1.00[AFR][1000 genomes]
rs73503252	1.00[AFR][1000 genomes]
rs73503255	1.00[AFR][1000 genomes]
rs73503262	1.00[AFR][1000 genomes]
rs73505278	1.00[AFR][1000 genomes]
rs73505301	1.00[AFR][1000 genomes]
rs73509320	1.00[AFR][1000 genomes]
rs73509326	0.87[AFR][1000 genomes]
rs73509329	0.95[AFR][1000 genomes]
rs73509336	1.00[AFR][1000 genomes]
rs73509395	1.00[AFR][1000 genomes]
rs73659520	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104325200-104350000	Weak transcription	HSMMtube	muscle
2	chr9:104327400-104348400	Weak transcription	Aorta	Aorta
3	chr9:104335600-104346000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:104343800-104345200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr9:104343800-104346400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr9:104344000-104347000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr9:104344200-104345600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:104344200-104346800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr9:104344400-104345400	Enhancers	Colon Smooth Muscle	Colon
10	chr9:104344400-104345400	Enhancers	Fetal Brain Female	brain
11	chr9:104344400-104345600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:104344400-104345600	Enhancers	NHDF-Ad	bronchial
13	chr9:104344400-104346000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:104344400-104346200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:104344400-104346200	Enhancers	Fetal Brain Male	brain
16	chr9:104344400-104346800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:104344400-104346800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr9:104344600-104345200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr9:104344600-104345400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:104344600-104345400	Enhancers	Rectal Smooth Muscle	rectum
21	chr9:104344600-104346000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr9:104344600-104346400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr9:104344600-104346400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr9:104344600-104346400	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr9:104344800-104345400	Enhancers	A549	lung
26	chr9:104344800-104346400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr9:104344800-104347800	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links