Variant report

Variant	rs73509320
Chromosome Location	chr9:104369509-104369510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104369041..104371983-chr9:104372682..104374513,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10119530	1.00[AMR][1000 genomes]
rs12336400	1.00[AMR][1000 genomes]
rs12340034	1.00[AMR][1000 genomes]
rs12340832	1.00[AMR][1000 genomes]
rs12340946	1.00[AMR][1000 genomes]
rs12341146	1.00[AMR][1000 genomes]
rs12341998	1.00[AMR][1000 genomes]
rs12342397	1.00[AMR][1000 genomes]
rs12344234	1.00[AMR][1000 genomes]
rs28643465	1.00[AMR][1000 genomes]
rs57958908	1.00[AFR][1000 genomes]
rs58719526	1.00[AFR][1000 genomes]
rs58723462	1.00[AFR][1000 genomes]
rs59346028	1.00[AFR][1000 genomes]
rs59775931	1.00[AFR][1000 genomes]
rs60076240	0.95[AFR][1000 genomes]
rs60850343	0.83[AFR][1000 genomes]
rs73496780	1.00[AMR][1000 genomes]
rs73501295	0.83[AFR][1000 genomes]
rs73501298	0.83[AFR][1000 genomes]
rs73501301	0.83[AFR][1000 genomes]
rs73503226	0.95[AFR][1000 genomes]
rs73503231	0.95[AFR][1000 genomes]
rs73503239	1.00[AFR][1000 genomes]
rs73503242	1.00[AFR][1000 genomes]
rs73503247	1.00[AFR][1000 genomes]
rs73503252	1.00[AFR][1000 genomes]
rs73503255	1.00[AFR][1000 genomes]
rs73503262	1.00[AFR][1000 genomes]
rs73505278	1.00[AFR][1000 genomes]
rs73505281	1.00[AFR][1000 genomes]
rs73505301	1.00[AFR][1000 genomes]
rs73509326	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73509329	0.95[AFR][1000 genomes]
rs73509336	1.00[AFR][1000 genomes]
rs73509395	1.00[AFR][1000 genomes]
rs73659520	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104362000-104387400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:104366400-104370000	Enhancers	Fetal Intestine Large	intestine
3	chr9:104367800-104371400	Weak transcription	Fetal Kidney	kidney
4	chr9:104368600-104369600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:104368800-104369600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:104369400-104370600	Flanking Active TSS	Liver	Liver

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