Variant report

Variant	rs580512
Chromosome Location	chr11:100994882-100994883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100992960..100995001-chr11:101041682..101044528,2	MCF-7	breast:
2	chr11:100988771..100991536-chr11:100994068..100996057,2	K562	blood:
3	chr11:100992998..100996575-chr11:101047325..101050411,3	MCF-7	breast:
4	chr11:100994260..100996186-chr11:101205184..101207862,2	MCF-7	breast:
5	chr11:100820823..100823466-chr11:100993922..100996465,2	K562	blood:
6	chr11:100984450..100986549-chr11:100993065..100996341,3	MCF-7	breast:
7	chr11:100993173..100995735-chr11:101190214..101191765,2	MCF-7	breast:
8	chr11:100985987..100991412-chr11:100992377..100996760,6	K562	blood:
9	chr11:100994873..100997835-chr11:101312314..101314341,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1783747	1.00[AMR][1000 genomes]
rs477151	1.00[ASN][1000 genomes]
rs503194	1.00[ASN][1000 genomes]
rs518162	1.00[ASN][1000 genomes]
rs518300	1.00[ASN][1000 genomes]
rs518485	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs528237	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs534200	1.00[ASN][1000 genomes]
rs545845	1.00[ASN][1000 genomes]
rs582691	1.00[ASN][1000 genomes]
rs601040	1.00[ASN][1000 genomes]
rs631003	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs658370	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898328	chr11:100993846-101009933	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
2	chr11:100975800-100996800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr11:100978000-100996400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:100991000-100997200	Weak transcription	Right Ventricle	heart
5	chr11:100994000-100995800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr11:100994000-100996600	Weak transcription	K562	blood
7	chr11:100994800-100995800	Active TSS	Aorta	Aorta
8	chr11:100994800-100995800	Active TSS	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links