Variant report

Variant	rs601040
Chromosome Location	chr11:100967552-100967553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1783747	1.00[JPT][hapmap]
rs477151	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs495997	1.00[JPT][hapmap]
rs503194	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs503362	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs514469	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs518162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs518300	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs534200	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs545845	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs580512	1.00[ASN][1000 genomes]
rs582691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs658370	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs660149	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
2	chr11:100959600-100971000	Weak transcription	Fetal Lung	lung
3	chr11:100962800-100970200	Weak transcription	Right Atrium	heart
4	chr11:100966000-100967800	Enhancers	Fetal Heart	heart
5	chr11:100966600-100968000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:100967000-100968400	Enhancers	Ovary	ovary
7	chr11:100967400-100968000	Enhancers	K562	blood
8	chr11:100967400-100970600	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links