Variant report

Variant	rs660149
Chromosome Location	chr11:100934314-100934315
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100933625..100935266-chr11:100997720..101000555,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11224578	0.84[EUR][1000 genomes]
rs1783747	1.00[JPT][hapmap]
rs471767	0.83[TSI][hapmap]
rs477151	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs492457	0.95[CEU][hapmap];0.97[GIH][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs495997	1.00[JPT][hapmap]
rs502465	0.95[CEU][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs503194	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs503362	0.95[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.80[TSI][hapmap]
rs518162	1.00[JPT][hapmap]
rs518300	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs519792	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs529216	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534200	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs543936	0.95[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs545004	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs545845	0.95[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs552916	0.95[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs561610	0.82[CEU][hapmap]
rs577615	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs578029	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs582691	1.00[JPT][hapmap]
rs601040	1.00[JPT][hapmap]
rs658370	0.81[AMR][1000 genomes]
rs666207	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs679275	0.95[CEU][hapmap];0.97[GIH][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905200-100935800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
3	chr11:100914400-100935600	Weak transcription	Aorta	Aorta
4	chr11:100931200-100935200	Weak transcription	Ovary	ovary
5	chr11:100931400-100950400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:100932400-100937800	Weak transcription	Right Atrium	heart
7	chr11:100933400-100934400	Weak transcription	Fetal Heart	heart
8	chr11:100933400-100936800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:100934200-100934600	Enhancers	Right Ventricle	heart

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