Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100998947..101001000-chr11:101033583..101035798,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082175	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11224567	1.00[YRI][hapmap]
rs11571213	1.00[YRI][hapmap]
rs1942839	0.87[EUR][1000 genomes]
rs4144343	0.87[EUR][1000 genomes]
rs4282959	0.81[EUR][1000 genomes]
rs4335511	0.84[EUR][1000 genomes]
rs471811	0.83[ASN][1000 genomes]
rs4754008	0.81[EUR][1000 genomes]
rs4754744	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs484273	1.00[ASN][1000 genomes]
rs495997	1.00[JPT][hapmap]
rs499590	1.00[ASN][1000 genomes]
rs503362	1.00[JPT][hapmap]
rs518162	1.00[JPT][hapmap]
rs518485	0.91[AMR][1000 genomes]
rs528237	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528399	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs534200	1.00[JPT][hapmap]
rs538458	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs545845	1.00[JPT][hapmap]
rs572915	0.87[EUR][1000 genomes]
rs580512	1.00[AMR][1000 genomes]
rs582691	1.00[JPT][hapmap]
rs601040	1.00[JPT][hapmap]
rs606386	0.87[EUR][1000 genomes]
rs607699	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs631003	0.91[AMR][1000 genomes]
rs6590841	0.87[EUR][1000 genomes]
rs6590842	0.87[EUR][1000 genomes]
rs660149	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101026400-101035800	Weak transcription	Right Ventricle	heart
2	chr11:101029400-101036000	Weak transcription	Left Ventricle	heart
3	chr11:101029400-101039800	Weak transcription	Aorta	Aorta
4	chr11:101029600-101036000	Weak transcription	Ovary	ovary
5	chr11:101030600-101048200	Weak transcription	Fetal Lung	lung
6	chr11:101031400-101035400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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