Variant report

Variant	rs606386
Chromosome Location	chr11:101052811-101052812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101047002..101048857-chr11:101051752..101054084,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10791449	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11571247	1.00[MEX][hapmap]
rs1783747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1942839	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1943758	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2156520	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4121760	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4144343	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4237600	0.85[AMR][1000 genomes]
rs4282959	0.85[AMR][1000 genomes]
rs4335511	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4351785	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4754008	0.85[AMR][1000 genomes]
rs4754744	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs495997	1.00[JPT][hapmap]
rs503362	1.00[JPT][hapmap]
rs518162	1.00[JPT][hapmap]
rs528237	0.87[EUR][1000 genomes]
rs528399	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs534200	1.00[JPT][hapmap]
rs538458	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs545845	1.00[JPT][hapmap]
rs572915	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs582691	1.00[JPT][hapmap]
rs601040	1.00[JPT][hapmap]
rs607699	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6590841	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6590842	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs660149	1.00[JPT][hapmap]
rs7104105	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7110399	0.85[AMR][1000 genomes]
rs7128630	0.81[AMR][1000 genomes]
rs7342177	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7342182	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7932597	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7942104	0.92[EUR][1000 genomes]
rs948749	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs948891	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs948892	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101037400-101080800	Weak transcription	Left Ventricle	heart
2	chr11:101046600-101058600	Weak transcription	Aorta	Aorta
3	chr11:101051200-101054400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:101052000-101059200	Weak transcription	Ovary	ovary

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