Variant report

Variant	rs7342177
Chromosome Location	chr11:101118794-101118795
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10791449	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1942839	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1943758	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2156520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4121760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4144343	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4237600	1.00[AMR][1000 genomes]
rs4282959	1.00[AMR][1000 genomes]
rs4335511	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4351785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4754008	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754744	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs528399	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs538458	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs572915	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs606386	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs607699	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6590841	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6590842	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7102599	0.86[AMR][1000 genomes]
rs7104105	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7110399	1.00[AMR][1000 genomes]
rs7119902	0.90[AMR][1000 genomes]
rs7128630	0.95[AMR][1000 genomes]
rs7342182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7942104	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs877627	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs948749	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs948891	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948892	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101116600-101125800	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links