Variant report

Variant	rs877627
Chromosome Location	chr11:101123324-101123325
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10791449	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1145463	1.00[CHB][hapmap]
rs1783747	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1942839	0.86[AMR][1000 genomes]
rs1942840	0.82[AFR][1000 genomes]
rs1943758	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2156520	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4121760	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4144343	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4237600	0.90[AMR][1000 genomes]
rs4282959	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4335511	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4351785	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4754008	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4754744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs480851	1.00[CHB][hapmap]
rs485283	1.00[CHB][hapmap]
rs493220	1.00[CHB][hapmap]
rs493957	1.00[CHB][hapmap]
rs495997	1.00[CHB][hapmap]
rs506487	1.00[CHB][hapmap]
rs522819	1.00[CHB][hapmap]
rs528399	0.81[AMR][1000 genomes]
rs538458	0.81[AMR][1000 genomes]
rs550778	1.00[CHB][hapmap]
rs560291	1.00[CHB][hapmap]
rs596223	1.00[CHB][hapmap]
rs619487	1.00[CHB][hapmap]
rs632542	1.00[CHB][hapmap]
rs6590841	0.81[AMR][1000 genomes]
rs6590842	0.90[AMR][1000 genomes]
rs7104105	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7110399	0.90[AMR][1000 genomes]
rs7119902	0.81[AMR][1000 genomes]
rs7128630	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7342177	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7342182	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7932597	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7942104	0.82[AMR][1000 genomes]
rs948749	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs948891	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948892	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101116600-101125800	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links