Variant report
| Variant | rs7119902 |
|---|---|
| Chromosome Location | chr11:101147676-101147677 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10791449 | 0.90[AMR][1000 genomes] |
| rs1942839 | 0.85[AMR][1000 genomes] |
| rs1943758 | 0.90[AMR][1000 genomes] |
| rs2156520 | 0.90[AMR][1000 genomes] |
| rs4121760 | 0.90[AMR][1000 genomes] |
| rs4144343 | 0.90[AMR][1000 genomes] |
| rs4237600 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4282959 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4335511 | 0.90[AMR][1000 genomes] |
| rs4351785 | 0.90[AMR][1000 genomes] |
| rs4754008 | 0.90[AMR][1000 genomes] |
| rs4754744 | 0.90[AMR][1000 genomes] |
| rs6590842 | 0.90[AMR][1000 genomes] |
| rs7102599 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7104105 | 0.85[AMR][1000 genomes] |
| rs7110399 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7128630 | 0.85[AMR][1000 genomes] |
| rs7342177 | 0.90[AMR][1000 genomes] |
| rs7342182 | 0.90[AMR][1000 genomes] |
| rs7932597 | 0.90[AMR][1000 genomes] |
| rs7942104 | 0.81[AMR][1000 genomes] |
| rs877627 | 0.81[AMR][1000 genomes] |
| rs948749 | 0.90[AMR][1000 genomes] |
| rs948891 | 0.95[AMR][1000 genomes] |
| rs948892 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv556131 | chr11:100985777-101480017 | Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv530644 | chr11:101010088-101486038 | Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2753322 | chr11:101052790-101311790 | Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv832247 | chr11:101123483-101298787 | Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:101126400-101169400 | Weak transcription | Ovary | ovary |
| 2 | chr11:101141000-101157400 | Weak transcription | Aorta | Aorta |
