Variant report

Variant	rs7104105
Chromosome Location	chr11:101102572-101102573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10791449	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1942839	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1942840	0.84[AFR][1000 genomes]
rs1943758	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2156520	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4121760	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4144343	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4237600	0.95[AMR][1000 genomes]
rs4282959	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs4335511	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4351785	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4754008	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4754744	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs528399	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs538458	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs572915	0.84[EUR][1000 genomes]
rs606386	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs607699	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6590841	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6590842	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7102599	0.82[AMR][1000 genomes]
rs7110399	0.95[AMR][1000 genomes]
rs7119902	0.85[AMR][1000 genomes]
rs7128630	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7342177	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7342182	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7932597	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7942104	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs877627	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs948749	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs948891	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs948892	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv2753322	chr11:101052790-101311790	Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101095200-101105400	Weak transcription	Ovary	ovary
2	chr11:101102000-101102600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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