Variant report

Variant	rs58060544
Chromosome Location	chr15:76637694-76637695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs4082688	0.87[AFR][1000 genomes]
rs57026560	0.87[AFR][1000 genomes]
rs57931886	0.87[AFR][1000 genomes]
rs58388611	1.00[AFR][1000 genomes]
rs60794367	0.87[AFR][1000 genomes]
rs7170187	0.87[AFR][1000 genomes]
rs7174377	0.87[AFR][1000 genomes]
rs7175175	0.87[AFR][1000 genomes]
rs73442144	1.00[AFR][1000 genomes]
rs73444270	0.87[AFR][1000 genomes]
rs73444271	0.87[AFR][1000 genomes]
rs73444275	0.87[AFR][1000 genomes]
rs73444284	1.00[AFR][1000 genomes]
rs73444286	1.00[AFR][1000 genomes]
rs73444294	1.00[AFR][1000 genomes]
rs73444302	1.00[AFR][1000 genomes]
rs73446211	1.00[AFR][1000 genomes]
rs73446219	1.00[AFR][1000 genomes]
rs73448115	0.87[AFR][1000 genomes]
rs73450219	0.87[AFR][1000 genomes]
rs73450231	0.87[AFR][1000 genomes]
rs73450235	1.00[AFR][1000 genomes]
rs73450238	1.00[AFR][1000 genomes]
rs73450253	0.87[AFR][1000 genomes]
rs73455126	1.00[AFR][1000 genomes]
rs73455146	1.00[AFR][1000 genomes]
rs73455153	1.00[AFR][1000 genomes]
rs73455162	1.00[AFR][1000 genomes]
rs73455170	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904399	chr15:76622903-76646575	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525769	chr15:76632487-76661925	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76630200-76641800	Weak transcription	A549	lung
2	chr15:76635400-76638000	Weak transcription	Pancreas	Pancrea
3	chr15:76635600-76638000	Weak transcription	Right Ventricle	heart
4	chr15:76636400-76640200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:76637000-76638000	Enhancers	HepG2	liver
6	chr15:76637200-76639000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
7	chr15:76637200-76640000	Weak transcription	K562	blood
8	chr15:76637400-76637800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr15:76637600-76637800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr15:76637600-76637800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr15:76637600-76637800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr15:76637600-76637800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:76637600-76637800	Enhancers	Hela-S3	cervix
14	chr15:76637600-76638000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr15:76637600-76638000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr15:76637600-76638000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:76637600-76638000	Bivalent Enhancer	Fetal Intestine Large	intestine
18	chr15:76637600-76638600	Flanking Active TSS	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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