Variant report

Variant	rs58103358
Chromosome Location	chr13:110602905-110602906
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11843704	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12184836	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585031	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1333986	0.87[ASN][1000 genomes]
rs2095284	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2105075	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492233	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492234	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7322474	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73615262	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73615281	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73615283	1.00[EUR][1000 genomes]
rs73615290	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7991628	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002682	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9583444	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9588041	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9588044	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110600400-110606800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:110602000-110613600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:110602400-110607600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:110602400-110608200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links