Variant report

Variant	rs73615281
Chromosome Location	chr13:110624743-110624744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11843704	1.00[EUR][1000 genomes]
rs12184836	1.00[EUR][1000 genomes]
rs12585031	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2095284	1.00[EUR][1000 genomes]
rs2105075	1.00[EUR][1000 genomes]
rs58103358	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6492233	1.00[EUR][1000 genomes]
rs6492234	1.00[EUR][1000 genomes]
rs7322474	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73615262	1.00[EUR][1000 genomes]
rs73615283	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73615290	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7991628	0.95[EUR][1000 genomes]
rs8002682	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9583444	1.00[EUR][1000 genomes]
rs9588041	1.00[EUR][1000 genomes]
rs9588044	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110621800-110625000	Weak transcription	Fetal Heart	heart
2	chr13:110622800-110625000	Enhancers	NHDF-Ad	bronchial
3	chr13:110623200-110624800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr13:110623400-110625000	Enhancers	Adipose Nuclei	Adipose
5	chr13:110624000-110626200	Enhancers	Fetal Brain Male	brain
6	chr13:110624000-110631800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr13:110624200-110625000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:110624200-110625000	Enhancers	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links