Variant report

Variant	rs8002682
Chromosome Location	chr13:110626731-110626732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11843704	1.00[EUR][1000 genomes]
rs12184836	1.00[EUR][1000 genomes]
rs12585031	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2095284	1.00[EUR][1000 genomes]
rs2105075	1.00[EUR][1000 genomes]
rs58103358	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6492233	1.00[EUR][1000 genomes]
rs6492234	1.00[EUR][1000 genomes]
rs7322474	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73615262	1.00[EUR][1000 genomes]
rs73615281	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73615283	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73615290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7991628	0.95[EUR][1000 genomes]
rs9583444	1.00[EUR][1000 genomes]
rs9588041	1.00[EUR][1000 genomes]
rs9588044	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110624000-110631800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:110625000-110626800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:110625000-110628400	Weak transcription	Adipose Nuclei	Adipose
4	chr13:110625400-110626800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:110625600-110628000	Weak transcription	Fetal Heart	heart
6	chr13:110626200-110631600	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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