Variant report

Variant	rs6492233
Chromosome Location	chr13:110598504-110598505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11843704	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12184836	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585031	1.00[EUR][1000 genomes]
rs1333986	0.87[ASN][1000 genomes]
rs2095284	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2105075	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58103358	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492234	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7322474	1.00[EUR][1000 genomes]
rs73615262	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73615281	1.00[EUR][1000 genomes]
rs73615283	1.00[EUR][1000 genomes]
rs73615290	1.00[EUR][1000 genomes]
rs7991628	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8002682	1.00[EUR][1000 genomes]
rs9583444	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9588041	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9588044	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110597400-110599000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr13:110597400-110599200	Enhancers	HSMM	muscle
3	chr13:110597400-110599400	Enhancers	HSMMtube	muscle
4	chr13:110597400-110600400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:110597600-110598600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:110597800-110599000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr13:110597800-110601600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:110598200-110598800	Enhancers	NHEK	skin
9	chr13:110598200-110599200	Enhancers	HMEC	breast
10	chr13:110598400-110598800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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