Variant report

Variant	rs58113049
Chromosome Location	chr20:24575237-24575238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56273983	1.00[AMR][1000 genomes]
rs57269062	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57684217	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58257276	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6036859	1.00[AMR][1000 genomes]
rs60918606	1.00[AMR][1000 genomes]
rs61313692	1.00[AMR][1000 genomes]
rs7354752	1.00[AMR][1000 genomes]
rs73902580	1.00[AMR][1000 genomes]
rs73902785	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902786	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902787	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902788	1.00[AMR][1000 genomes]
rs73902790	1.00[AMR][1000 genomes]
rs73905125	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905414	1.00[AMR][1000 genomes]
rs73905416	1.00[AMR][1000 genomes]
rs8119455	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24568200-24577400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:24568800-24575800	Weak transcription	Brain Substantia Nigra	brain
3	chr20:24571400-24584800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr20:24573000-24577200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr20:24574600-24580200	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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