Variant report

Variant	rs73905414
Chromosome Location	chr20:24627185-24627186
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24625629..24628366-chr20:24631832..24633768,2	MCF-7	breast:
2	chr20:24624340..24627189-chr20:24639641..24641542,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs56273983	1.00[AMR][1000 genomes]
rs56729487	0.81[AFR][1000 genomes]
rs57269062	1.00[AMR][1000 genomes]
rs57684217	1.00[AMR][1000 genomes]
rs58113049	1.00[AMR][1000 genomes]
rs58257276	1.00[AMR][1000 genomes]
rs6036859	1.00[AMR][1000 genomes]
rs60918606	1.00[AMR][1000 genomes]
rs61313692	1.00[AMR][1000 genomes]
rs7354752	1.00[AMR][1000 genomes]
rs73901839	0.81[AFR][1000 genomes]
rs73901845	0.90[AFR][1000 genomes]
rs73902580	1.00[AMR][1000 genomes]
rs73902785	1.00[AMR][1000 genomes]
rs73902786	1.00[AMR][1000 genomes]
rs73902787	1.00[AMR][1000 genomes]
rs73902788	1.00[AMR][1000 genomes]
rs73902790	1.00[AMR][1000 genomes]
rs73905125	1.00[AMR][1000 genomes]
rs73905416	1.00[AMR][1000 genomes]
rs73905419	1.00[AFR][1000 genomes]
rs8119455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv912824	chr20:24612808-24639916	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24615400-24633800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr20:24616200-24639600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr20:24616400-24630200	Weak transcription	Brain Angular Gyrus	brain
4	chr20:24620000-24641200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr20:24625200-24630600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:24625600-24629400	Weak transcription	Osteobl	bone
7	chr20:24625600-24633800	Weak transcription	Spleen	Spleen
8	chr20:24625800-24628600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr20:24626000-24629000	Enhancers	Thymus	Thymus
10	chr20:24626000-24629600	Enhancers	Fetal Thymus	thymus
11	chr20:24626200-24627400	Enhancers	Primary B cells from peripheral blood	blood
12	chr20:24626400-24627400	Enhancers	Primary T cells from cord blood	blood
13	chr20:24626400-24629000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr20:24626600-24627200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr20:24626600-24627200	Enhancers	Primary hematopoietic stem cells	blood
16	chr20:24626600-24627200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr20:24626600-24627400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr20:24626600-24627400	Enhancers	Dnd41	blood
19	chr20:24626600-24628600	Weak transcription	Brain Substantia Nigra	brain
20	chr20:24626600-24628800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr20:24626800-24627200	Enhancers	Primary B cells from cord blood	blood
22	chr20:24626800-24628600	Weak transcription	Brain Hippocampus Middle	brain
23	chr20:24627000-24629400	Weak transcription	Brain Inferior Temporal Lobe	brain

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