Variant report

Variant	rs73901839
Chromosome Location	chr20:24463877-24463878
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24462787..24464329-chr20:24469582..24472376,2	MCF-7	breast:
2	chr20:24461646..24463186-chr20:24463669..24465264,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs56347325	1.00[AMR][1000 genomes]
rs56354135	1.00[AMR][1000 genomes]
rs56729487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57296566	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59063859	1.00[AMR][1000 genomes]
rs59880334	1.00[AMR][1000 genomes]
rs6036827	1.00[AMR][1000 genomes]
rs60662841	1.00[AMR][1000 genomes]
rs60856209	1.00[AMR][1000 genomes]
rs61505903	1.00[AMR][1000 genomes]
rs7262897	1.00[AMR][1000 genomes]
rs7265574	1.00[AMR][1000 genomes]
rs7269292	1.00[AMR][1000 genomes]
rs7274088	1.00[AMR][1000 genomes]
rs73343340	1.00[AMR][1000 genomes]
rs73901828	1.00[AMR][1000 genomes]
rs73901836	1.00[AMR][1000 genomes]
rs73901842	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901843	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901845	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901846	1.00[AMR][1000 genomes]
rs73901848	1.00[AMR][1000 genomes]
rs73901849	1.00[AMR][1000 genomes]
rs73901853	1.00[AMR][1000 genomes]
rs73901971	1.00[AMR][1000 genomes]
rs73901972	1.00[AMR][1000 genomes]
rs73901973	1.00[AMR][1000 genomes]
rs73901974	1.00[AMR][1000 genomes]
rs73901975	1.00[AMR][1000 genomes]
rs73901980	1.00[AMR][1000 genomes]
rs73902001	1.00[AMR][1000 genomes]
rs73902579	1.00[AMR][1000 genomes]
rs73902589	1.00[AMR][1000 genomes]
rs73905117	1.00[AMR][1000 genomes]
rs73905118	1.00[AMR][1000 genomes]
rs73905119	1.00[AMR][1000 genomes]
rs73905121	1.00[AMR][1000 genomes]
rs73905122	1.00[AMR][1000 genomes]
rs73905123	1.00[AMR][1000 genomes]
rs73905409	1.00[AMR][1000 genomes]
rs73905414	0.81[AFR][1000 genomes]
rs73905419	0.81[AFR][1000 genomes]
rs8115937	1.00[AMR][1000 genomes]
rs8116915	1.00[AMR][1000 genomes]
rs8119455	0.81[AFR][1000 genomes]
rs8120500	1.00[AMR][1000 genomes]
rs9753733	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24457600-24470600	Weak transcription	Fetal Brain Female	brain
2	chr20:24459400-24471000	Weak transcription	Fetal Muscle Leg	muscle
3	chr20:24459400-24471800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr20:24459600-24465000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr20:24459600-24472000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr20:24460200-24468800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr20:24460200-24469600	Weak transcription	Brain Anterior Caudate	brain
8	chr20:24460200-24471400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr20:24460200-24472600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr20:24460400-24468200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr20:24460400-24468600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr20:24460400-24469600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr20:24460600-24464200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr20:24460800-24464200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr20:24460800-24464200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr20:24460800-24468400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr20:24460800-24469800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr20:24460800-24483800	Weak transcription	Aorta	Aorta
19	chr20:24461400-24468200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr20:24461400-24469800	Weak transcription	Fetal Brain Male	brain
21	chr20:24461600-24468000	Weak transcription	Brain Angular Gyrus	brain
22	chr20:24461800-24468600	Weak transcription	Brain Substantia Nigra	brain
23	chr20:24462200-24469000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr20:24462400-24469800	Weak transcription	Fetal Kidney	kidney
25	chr20:24462400-24472600	Weak transcription	Right Atrium	heart
26	chr20:24463200-24469600	Weak transcription	Fetal Lung	lung
27	chr20:24463800-24464400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr20:24463800-24464400	Enhancers	Fetal Heart	heart
29	chr20:24463800-24464600	Enhancers	Brain Hippocampus Middle	brain
30	chr20:24463800-24464600	Enhancers	Right Ventricle	heart

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