Variant report
Variant | rs8115937 |
---|---|
Chromosome Location | chr20:24329835-24329836 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs56347325 | 1.00[AMR][1000 genomes] |
rs56354135 | 1.00[AMR][1000 genomes] |
rs56729487 | 1.00[AMR][1000 genomes] |
rs57296566 | 1.00[AMR][1000 genomes] |
rs59063859 | 1.00[AMR][1000 genomes] |
rs6036827 | 1.00[AMR][1000 genomes] |
rs60662841 | 1.00[AMR][1000 genomes] |
rs60856209 | 1.00[AMR][1000 genomes] |
rs61505903 | 1.00[AMR][1000 genomes] |
rs7262897 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7265574 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7269292 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7274088 | 1.00[AMR][1000 genomes] |
rs73343340 | 1.00[AMR][1000 genomes] |
rs73901828 | 1.00[AMR][1000 genomes] |
rs73901836 | 1.00[AMR][1000 genomes] |
rs73901839 | 1.00[AMR][1000 genomes] |
rs73901842 | 1.00[AMR][1000 genomes] |
rs73901843 | 1.00[AMR][1000 genomes] |
rs73901845 | 1.00[AMR][1000 genomes] |
rs73901846 | 1.00[AMR][1000 genomes] |
rs73901848 | 1.00[AMR][1000 genomes] |
rs73901849 | 1.00[AMR][1000 genomes] |
rs73901853 | 1.00[AMR][1000 genomes] |
rs73901971 | 1.00[AMR][1000 genomes] |
rs73901972 | 1.00[AMR][1000 genomes] |
rs73901973 | 1.00[AMR][1000 genomes] |
rs73901974 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73901975 | 1.00[AMR][1000 genomes] |
rs73901980 | 1.00[AMR][1000 genomes] |
rs73902001 | 1.00[AMR][1000 genomes] |
rs73905409 | 1.00[AMR][1000 genomes] |
rs8120500 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv9793 | chr20:23939613-24734850 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
2 | nsv833945 | chr20:24163437-24349462 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv1058146 | chr20:24210196-24531087 | Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv833946 | chr20:24320375-24490702 | Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:24322600-24331400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |