Variant report

Variant	rs73901828
Chromosome Location	chr20:24433773-24433774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs56347325	1.00[AMR][1000 genomes]
rs56354135	1.00[AMR][1000 genomes]
rs56729487	1.00[AMR][1000 genomes]
rs57296566	1.00[AMR][1000 genomes]
rs59063859	1.00[AMR][1000 genomes]
rs59880334	1.00[AMR][1000 genomes]
rs6036827	1.00[AMR][1000 genomes]
rs60662841	1.00[AMR][1000 genomes]
rs60856209	1.00[AMR][1000 genomes]
rs61505903	1.00[AMR][1000 genomes]
rs7262897	1.00[AMR][1000 genomes]
rs7265574	1.00[AMR][1000 genomes]
rs7269292	1.00[AMR][1000 genomes]
rs7274088	1.00[AMR][1000 genomes]
rs73343340	1.00[AMR][1000 genomes]
rs73901836	1.00[AMR][1000 genomes]
rs73901839	1.00[AMR][1000 genomes]
rs73901842	1.00[AMR][1000 genomes]
rs73901843	1.00[AMR][1000 genomes]
rs73901845	1.00[AMR][1000 genomes]
rs73901846	1.00[AMR][1000 genomes]
rs73901848	1.00[AMR][1000 genomes]
rs73901849	1.00[AMR][1000 genomes]
rs73901853	1.00[AMR][1000 genomes]
rs73901971	1.00[AMR][1000 genomes]
rs73901972	1.00[AMR][1000 genomes]
rs73901973	1.00[AMR][1000 genomes]
rs73901974	1.00[AMR][1000 genomes]
rs73901975	1.00[AMR][1000 genomes]
rs73901980	1.00[AMR][1000 genomes]
rs73902001	1.00[AMR][1000 genomes]
rs73902579	1.00[AMR][1000 genomes]
rs73902589	1.00[AMR][1000 genomes]
rs73905117	1.00[AMR][1000 genomes]
rs73905118	1.00[AMR][1000 genomes]
rs73905119	1.00[AMR][1000 genomes]
rs73905121	1.00[AMR][1000 genomes]
rs73905122	1.00[AMR][1000 genomes]
rs73905123	1.00[AMR][1000 genomes]
rs73905409	1.00[AMR][1000 genomes]
rs8115937	1.00[AMR][1000 genomes]
rs8116915	1.00[AMR][1000 genomes]
rs8120500	1.00[AMR][1000 genomes]
rs9753733	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24426600-24435800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:24427400-24436600	Weak transcription	Brain Hippocampus Middle	brain
3	chr20:24429000-24434200	Weak transcription	Dnd41	blood
4	chr20:24429400-24434400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr20:24429800-24434400	Weak transcription	Fetal Thymus	thymus
6	chr20:24430000-24434200	Weak transcription	Primary T cells from cord blood	blood
7	chr20:24432000-24435600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr20:24432400-24439200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:24432600-24435600	Weak transcription	Fetal Brain Male	brain
10	chr20:24432600-24437200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr20:24433200-24433800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr20:24433600-24433800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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