Variant report

Variant	rs73905121
Chromosome Location	chr20:24569110-24569111
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs56347325	1.00[AMR][1000 genomes]
rs56729487	1.00[AMR][1000 genomes]
rs57296566	1.00[AMR][1000 genomes]
rs59880334	1.00[AMR][1000 genomes]
rs6036827	1.00[AMR][1000 genomes]
rs60662841	1.00[AMR][1000 genomes]
rs60856209	1.00[AMR][1000 genomes]
rs73343340	1.00[AMR][1000 genomes]
rs73901828	1.00[AMR][1000 genomes]
rs73901836	1.00[AMR][1000 genomes]
rs73901839	1.00[AMR][1000 genomes]
rs73901842	1.00[AMR][1000 genomes]
rs73901843	1.00[AMR][1000 genomes]
rs73901845	1.00[AMR][1000 genomes]
rs73901846	1.00[AMR][1000 genomes]
rs73901848	1.00[AMR][1000 genomes]
rs73901849	1.00[AMR][1000 genomes]
rs73901853	1.00[AMR][1000 genomes]
rs73902001	1.00[AMR][1000 genomes]
rs73902579	1.00[AMR][1000 genomes]
rs73902589	1.00[AMR][1000 genomes]
rs73905117	1.00[AMR][1000 genomes]
rs73905118	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905119	1.00[AMR][1000 genomes]
rs73905122	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905123	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8116915	1.00[AMR][1000 genomes]
rs9753733	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24538800-24570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:24562600-24570000	Weak transcription	Spleen	Spleen
3	chr20:24566400-24569200	Enhancers	Fetal Brain Male	brain
4	chr20:24567000-24569400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr20:24567200-24569400	Enhancers	Brain Germinal Matrix	brain
6	chr20:24567400-24569200	Enhancers	Fetal Brain Female	brain
7	chr20:24567800-24569200	Enhancers	Brain Cingulate Gyrus	brain
8	chr20:24567800-24569200	Enhancers	Fetal Lung	lung
9	chr20:24567800-24569400	Enhancers	Fetal Muscle Leg	muscle
10	chr20:24568200-24569200	Enhancers	Fetal Thymus	thymus
11	chr20:24568200-24569400	Enhancers	Brain Anterior Caudate	brain
12	chr20:24568200-24574600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr20:24568200-24577400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr20:24568400-24569400	Enhancers	Fetal Muscle Trunk	muscle
15	chr20:24568800-24573800	Weak transcription	Fetal Heart	heart
16	chr20:24568800-24575800	Weak transcription	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links