Variant report

Variant	rs60856209
Chromosome Location	chr20:24455331-24455332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs56347325	1.00[AMR][1000 genomes]
rs56354135	1.00[AMR][1000 genomes]
rs56729487	1.00[AMR][1000 genomes]
rs57296566	1.00[AMR][1000 genomes]
rs59063859	1.00[AMR][1000 genomes]
rs59880334	1.00[AMR][1000 genomes]
rs6036827	1.00[AMR][1000 genomes]
rs60662841	1.00[AMR][1000 genomes]
rs61505903	1.00[AMR][1000 genomes]
rs7262897	1.00[AMR][1000 genomes]
rs7265574	1.00[AMR][1000 genomes]
rs7269292	1.00[AMR][1000 genomes]
rs7274088	1.00[AMR][1000 genomes]
rs73343340	1.00[AMR][1000 genomes]
rs73901828	1.00[AMR][1000 genomes]
rs73901836	1.00[AMR][1000 genomes]
rs73901839	1.00[AMR][1000 genomes]
rs73901842	1.00[AMR][1000 genomes]
rs73901843	1.00[AMR][1000 genomes]
rs73901845	1.00[AMR][1000 genomes]
rs73901846	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901848	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901849	1.00[AMR][1000 genomes]
rs73901853	1.00[AMR][1000 genomes]
rs73901971	1.00[AMR][1000 genomes]
rs73901972	1.00[AMR][1000 genomes]
rs73901973	1.00[AMR][1000 genomes]
rs73901974	1.00[AMR][1000 genomes]
rs73901975	1.00[AMR][1000 genomes]
rs73901980	1.00[AMR][1000 genomes]
rs73902001	1.00[AMR][1000 genomes]
rs73902579	1.00[AMR][1000 genomes]
rs73902589	1.00[AMR][1000 genomes]
rs73905117	1.00[AMR][1000 genomes]
rs73905118	1.00[AMR][1000 genomes]
rs73905119	1.00[AMR][1000 genomes]
rs73905121	1.00[AMR][1000 genomes]
rs73905122	1.00[AMR][1000 genomes]
rs73905123	1.00[AMR][1000 genomes]
rs73905409	1.00[AMR][1000 genomes]
rs8115937	1.00[AMR][1000 genomes]
rs8116915	1.00[AMR][1000 genomes]
rs8120500	1.00[AMR][1000 genomes]
rs9753733	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24452400-24455800	Weak transcription	HMEC	breast
2	chr20:24452400-24458400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:24452400-24458600	Weak transcription	Right Atrium	heart
4	chr20:24452400-24463800	Weak transcription	Right Ventricle	heart
5	chr20:24452600-24459400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:24452600-24459400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr20:24453200-24455400	Enhancers	Brain Angular Gyrus	brain
8	chr20:24453400-24455800	Weak transcription	Brain Germinal Matrix	brain
9	chr20:24453600-24459000	Weak transcription	Fetal Brain Male	brain
10	chr20:24454000-24456400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr20:24454200-24455400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr20:24454200-24455800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr20:24454400-24456000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr20:24454400-24456000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr20:24454400-24457600	Weak transcription	Brain Anterior Caudate	brain
16	chr20:24454400-24459000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr20:24454600-24455800	Weak transcription	Brain Substantia Nigra	brain
18	chr20:24454600-24457400	Weak transcription	Fetal Heart	heart
19	chr20:24454600-24457800	Weak transcription	Left Ventricle	heart
20	chr20:24454800-24455800	Weak transcription	Brain Hippocampus Middle	brain
21	chr20:24454800-24459200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr20:24455200-24455600	Weak transcription	Brain Cingulate Gyrus	brain

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