Variant report

Variant	rs73343340
Chromosome Location	chr20:24510789-24510790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs56347325	1.00[AMR][1000 genomes]
rs56354135	1.00[AMR][1000 genomes]
rs56729487	1.00[AMR][1000 genomes]
rs57296566	1.00[AMR][1000 genomes]
rs59880334	1.00[AMR][1000 genomes]
rs6036827	1.00[AMR][1000 genomes]
rs60662841	1.00[AMR][1000 genomes]
rs60856209	1.00[AMR][1000 genomes]
rs7269292	1.00[AMR][1000 genomes]
rs7274088	1.00[AMR][1000 genomes]
rs73901828	1.00[AMR][1000 genomes]
rs73901836	1.00[AMR][1000 genomes]
rs73901839	1.00[AMR][1000 genomes]
rs73901842	1.00[AMR][1000 genomes]
rs73901843	1.00[AMR][1000 genomes]
rs73901845	1.00[AMR][1000 genomes]
rs73901846	1.00[AMR][1000 genomes]
rs73901848	1.00[AMR][1000 genomes]
rs73901849	1.00[AMR][1000 genomes]
rs73901853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73901975	1.00[AMR][1000 genomes]
rs73901980	1.00[AMR][1000 genomes]
rs73902001	1.00[AMR][1000 genomes]
rs73902579	1.00[AMR][1000 genomes]
rs73902589	1.00[AMR][1000 genomes]
rs73905117	1.00[AMR][1000 genomes]
rs73905118	1.00[AMR][1000 genomes]
rs73905119	1.00[AMR][1000 genomes]
rs73905121	1.00[AMR][1000 genomes]
rs73905122	1.00[AMR][1000 genomes]
rs73905123	1.00[AMR][1000 genomes]
rs8115937	1.00[AMR][1000 genomes]
rs8116915	1.00[AMR][1000 genomes]
rs8120500	1.00[AMR][1000 genomes]
rs9753733	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24503400-24511000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr20:24503800-24511200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:24504000-24525800	Weak transcription	Aorta	Aorta
4	chr20:24505000-24510800	Weak transcription	Brain Germinal Matrix	brain
5	chr20:24508200-24523800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:24510000-24512600	Weak transcription	Brain Angular Gyrus	brain
7	chr20:24510000-24515000	Weak transcription	Brain Substantia Nigra	brain
8	chr20:24510200-24510800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr20:24510200-24515000	Weak transcription	Brain Hippocampus Middle	brain
10	chr20:24510400-24510800	ZNF genes & repeats	Gastric	stomach
11	chr20:24510600-24510800	Enhancers	Left Ventricle	heart
12	chr20:24510600-24511200	Enhancers	Osteobl	bone
13	chr20:24510600-24511400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr20:24510600-24511400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr20:24510600-24512200	Weak transcription	Brain Anterior Caudate	brain
16	chr20:24510600-24512600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr20:24510600-24512800	Weak transcription	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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