Variant report

Variant	rs61313692
Chromosome Location	chr20:24590595-24590596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56273983	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57269062	1.00[AMR][1000 genomes]
rs57684217	1.00[AMR][1000 genomes]
rs58113049	1.00[AMR][1000 genomes]
rs58257276	1.00[AMR][1000 genomes]
rs6036859	1.00[AMR][1000 genomes]
rs60918606	1.00[AMR][1000 genomes]
rs7354752	1.00[AMR][1000 genomes]
rs73902580	1.00[AMR][1000 genomes]
rs73902785	1.00[AMR][1000 genomes]
rs73902786	1.00[AMR][1000 genomes]
rs73902787	1.00[AMR][1000 genomes]
rs73902788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902790	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905125	1.00[AMR][1000 genomes]
rs73905414	1.00[AMR][1000 genomes]
rs73905416	1.00[AMR][1000 genomes]
rs8119455	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24581800-24590600	Weak transcription	Brain Anterior Caudate	brain
2	chr20:24583200-24599800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr20:24584400-24591000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
5	chr20:24585200-24591000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr20:24585800-24590800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr20:24586000-24590800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr20:24587000-24590800	Weak transcription	Brain Hippocampus Middle	brain
9	chr20:24587000-24591000	Weak transcription	Brain Substantia Nigra	brain
10	chr20:24589400-24590800	Enhancers	Primary B cells from peripheral blood	blood
11	chr20:24589400-24594000	Weak transcription	Primary T cells from cord blood	blood
12	chr20:24589600-24590800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr20:24589800-24590600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr20:24590000-24590600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr20:24590000-24591000	Enhancers	HSMMtube	muscle
16	chr20:24590000-24591200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr20:24590000-24592200	Enhancers	Brain Cingulate Gyrus	brain
18	chr20:24590000-24592400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr20:24590000-24592600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr20:24590200-24592000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr20:24590400-24590600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr20:24590400-24591400	Enhancers	GM12878-XiMat	blood
23	chr20:24590400-24591600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr20:24590400-24591800	Enhancers	H9 Cell Line	embryonic stem cell
25	chr20:24590400-24591800	Enhancers	HSMM	muscle
26	chr20:24590400-24592000	Enhancers	NH-A	brain
27	chr20:24590400-24592400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr20:24590400-24592600	Enhancers	HMEC	breast

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