Variant report
| Variant | rs58143595 |
|---|---|
| Chromosome Location | chr2:12101791-12101792 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs12463701 | 1.00[ASN][1000 genomes] |
| rs12464227 | 1.00[ASN][1000 genomes] |
| rs12469736 | 1.00[ASN][1000 genomes] |
| rs12471363 | 1.00[ASN][1000 genomes] |
| rs12472165 | 1.00[ASN][1000 genomes] |
| rs12475585 | 1.00[ASN][1000 genomes] |
| rs12476249 | 1.00[ASN][1000 genomes] |
| rs12478633 | 1.00[ASN][1000 genomes] |
| rs12478664 | 1.00[ASN][1000 genomes] |
| rs12478705 | 1.00[ASN][1000 genomes] |
| rs12991902 | 1.00[ASN][1000 genomes] |
| rs16858071 | 0.84[AFR][1000 genomes] |
| rs16858077 | 0.93[EUR][1000 genomes] |
| rs28420399 | 1.00[ASN][1000 genomes] |
| rs34506780 | 1.00[ASN][1000 genomes] |
| rs34819724 | 1.00[ASN][1000 genomes] |
| rs34900642 | 1.00[ASN][1000 genomes] |
| rs35954069 | 1.00[ASN][1000 genomes] |
| rs41378155 | 1.00[ASN][1000 genomes] |
| rs60510807 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60873627 | 1.00[ASN][1000 genomes] |
| rs6708295 | 0.80[EUR][1000 genomes] |
| rs6708806 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6709058 | 0.93[EUR][1000 genomes] |
| rs6715248 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6715988 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6734988 | 0.80[EUR][1000 genomes] |
| rs6760198 | 0.93[EUR][1000 genomes] |
| rs71446438 | 1.00[ASN][1000 genomes] |
| rs73915889 | 1.00[ASN][1000 genomes] |
| rs73915899 | 1.00[ASN][1000 genomes] |
| rs73915902 | 1.00[ASN][1000 genomes] |
| rs73918407 | 1.00[ASN][1000 genomes] |
| rs73918410 | 1.00[ASN][1000 genomes] |
| rs73918411 | 1.00[ASN][1000 genomes] |
| rs73918413 | 1.00[ASN][1000 genomes] |
| rs7593141 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003899 | chr2:11789374-12248081 | Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv833403 | chr2:11944552-12125634 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:12096400-12104200 | Weak transcription | H9 Cell Line | embryonic stem cell |
