Variant report

Variant	rs58156158
Chromosome Location	chr2:55305306-55305307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10496040	0.91[AFR][1000 genomes]
rs11884082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11887323	0.83[AFR][1000 genomes]
rs11892015	1.00[AMR][1000 genomes]
rs11895689	0.85[AMR][1000 genomes]
rs11899197	1.00[AMR][1000 genomes]
rs11899295	1.00[AMR][1000 genomes]
rs15028	1.00[AMR][1000 genomes]
rs17046545	1.00[AMR][1000 genomes]
rs17046564	1.00[AMR][1000 genomes]
rs17046658	0.91[AFR][1000 genomes]
rs2028728	0.86[AFR][1000 genomes]
rs2864047	0.85[AMR][1000 genomes]
rs2864048	0.85[AMR][1000 genomes]
rs4672011	0.91[AFR][1000 genomes]
rs60989687	0.81[AFR][1000 genomes]
rs73936506	0.85[AMR][1000 genomes]
rs73936508	0.85[AMR][1000 genomes]
rs73936512	1.00[AMR][1000 genomes]
rs73936517	1.00[AMR][1000 genomes]
rs73936518	1.00[AMR][1000 genomes]
rs73936821	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73936824	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs957920	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55299200-55318000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:55304400-55309200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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