Variant report

Variant	rs957920
Chromosome Location	chr2:55317608-55317609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:55309144..55311661-chr2:55314427..55318457,3	K562	blood:
2	chr2:55317491..55320389-chr2:55353097..55355543,2	K562	blood:
3	chr2:55315563..55318504-chr2:55346291..55347986,2	K562	blood:

rs_ID	r²[population]
rs10496040	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs11884082	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11892015	1.00[AMR][1000 genomes]
rs11895689	0.85[AMR][1000 genomes]
rs11899197	1.00[AMR][1000 genomes]
rs11899295	1.00[AMR][1000 genomes]
rs15028	1.00[AMR][1000 genomes]
rs17046545	1.00[AMR][1000 genomes]
rs17046564	1.00[AMR][1000 genomes]
rs17046658	0.83[YRI][hapmap];0.88[AFR][1000 genomes]
rs2028728	0.81[YRI][hapmap];0.83[AFR][1000 genomes]
rs2864047	0.85[AMR][1000 genomes]
rs2864048	0.85[AMR][1000 genomes]
rs4672011	0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs58156158	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73936506	0.85[AMR][1000 genomes]
rs73936508	0.85[AMR][1000 genomes]
rs73936512	1.00[AMR][1000 genomes]
rs73936517	1.00[AMR][1000 genomes]
rs73936518	1.00[AMR][1000 genomes]
rs73936821	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73936824	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55299200-55318000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:55312000-55321200	Weak transcription	Lung	lung
3	chr2:55314600-55318400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:55315000-55318000	Weak transcription	Hela-S3	cervix
5	chr2:55315000-55319400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:55315400-55317800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr2:55315400-55319200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:55315400-55319800	Weak transcription	A549	lung
9	chr2:55315400-55320200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:55315400-55320200	Weak transcription	Brain Angular Gyrus	brain
11	chr2:55315400-55320200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:55315400-55320600	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:55315400-55320800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:55315400-55323600	Weak transcription	HSMMtube	muscle
15	chr2:55315600-55317800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr2:55315600-55317800	Weak transcription	NHLF	lung
17	chr2:55315600-55319000	Enhancers	K562	blood
18	chr2:55315600-55319600	Weak transcription	HUVEC	blood vessel
19	chr2:55316000-55317800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr2:55316000-55317800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:55316000-55318000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:55316000-55320000	Weak transcription	Osteobl	bone
23	chr2:55316000-55320600	Weak transcription	Brain Substantia Nigra	brain
24	chr2:55316000-55322800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:55316000-55323800	Weak transcription	NHDF-Ad	bronchial
26	chr2:55316800-55318200	Enhancers	HSMM	muscle
27	chr2:55316800-55327200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr2:55317200-55319800	Weak transcription	Fetal Heart	heart
29	chr2:55317200-55323800	Weak transcription	Fetal Muscle Leg	muscle
30	chr2:55317400-55318800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr2:55317400-55322000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr2:55317600-55318400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr2:55317600-55318600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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