Variant report

Variant	rs73936821
Chromosome Location	chr2:55285525-55285526
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10496040	0.83[AFR][1000 genomes]
rs11884082	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11887323	0.91[AFR][1000 genomes]
rs11892015	1.00[AMR][1000 genomes]
rs11895689	0.85[AMR][1000 genomes]
rs11899197	1.00[AMR][1000 genomes]
rs11899295	1.00[AMR][1000 genomes]
rs15028	1.00[AMR][1000 genomes]
rs17046545	1.00[AMR][1000 genomes]
rs17046564	1.00[AMR][1000 genomes]
rs17046658	0.83[AFR][1000 genomes]
rs2028728	0.85[AFR][1000 genomes]
rs2864047	0.85[AMR][1000 genomes]
rs2864048	0.85[AMR][1000 genomes]
rs4672011	0.83[AFR][1000 genomes]
rs58156158	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73936506	0.85[AMR][1000 genomes]
rs73936508	0.85[AMR][1000 genomes]
rs73936512	1.00[AMR][1000 genomes]
rs73936517	1.00[AMR][1000 genomes]
rs73936518	1.00[AMR][1000 genomes]
rs73936818	0.80[AFR][1000 genomes]
rs73936824	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs957920	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874155	chr2:55205262-55307646	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55278200-55288800	Weak transcription	Lung	lung
2	chr2:55278800-55288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:55278800-55290800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:55279000-55287000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:55279000-55290600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:55279400-55287600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:55279800-55287400	Weak transcription	HSMM	muscle
8	chr2:55280000-55289000	Weak transcription	HepG2	liver
9	chr2:55280200-55287200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:55280200-55288200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr2:55281800-55287600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr2:55283600-55287600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr2:55283800-55286600	Weak transcription	K562	blood
14	chr2:55284800-55287200	Weak transcription	Fetal Heart	heart
15	chr2:55285400-55285600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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