Variant report

Variant	rs58173492
Chromosome Location	chr8:9767488-9767489
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs28528320	1.00[AMR][1000 genomes]
rs55740443	1.00[AMR][1000 genomes]
rs56357738	1.00[AMR][1000 genomes]
rs57660451	1.00[AMR][1000 genomes]
rs61279137	1.00[AMR][1000 genomes]
rs61573224	1.00[AMR][1000 genomes]
rs61678441	1.00[AMR][1000 genomes]
rs6601369	1.00[AMR][1000 genomes]
rs73662550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662601	1.00[AMR][1000 genomes]
rs73662602	1.00[AMR][1000 genomes]
rs73664903	1.00[AMR][1000 genomes]
rs73664904	1.00[AMR][1000 genomes]
rs73664905	1.00[AMR][1000 genomes]
rs73664906	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9765000-9768400	Weak transcription	Brain Angular Gyrus	brain
2	chr8:9765600-9767800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr8:9765600-9770200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:9766000-9768600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr8:9766600-9768600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:9766600-9771200	Enhancers	Fetal Brain Male	brain
7	chr8:9767200-9768000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:9767200-9770400	Enhancers	Brain Germinal Matrix	brain
9	chr8:9767400-9768200	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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