Variant report

Variant	rs73662552
Chromosome Location	chr8:9757737-9757738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9755502..9758474-chr8:9759081..9761841,2	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP1L1-5	chr8:9757574-9757796	ENSG00000253230
2	lnc-RP1L1-5	chr8:9757574-9760907	ENSG00000253230
3	lnc-RP1L1-5	chr8:9757574-9757796	ENSG00000253230
4	lnc-RP1L1-5	chr8:9757231-9757796	NONHSAT124969
5	lnc-RP1L1-5	chr8:9757496-9758122	NONHSAT124970
6	lnc-RP1L1-5	chr8:9757496-9757796	NONHSAT124971
7	lnc-RP1L1-5	chr8:9757531-9757796	NONHSAT124972

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs28528320	1.00[AMR][1000 genomes]
rs28699193	1.00[ASN][1000 genomes]
rs55740443	1.00[AMR][1000 genomes]
rs56357738	1.00[AMR][1000 genomes]
rs57660451	1.00[AMR][1000 genomes]
rs58173492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61279137	1.00[AMR][1000 genomes]
rs61573224	1.00[AMR][1000 genomes]
rs61678441	1.00[AMR][1000 genomes]
rs6601369	1.00[AMR][1000 genomes]
rs73662550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662601	1.00[AMR][1000 genomes]
rs73662602	1.00[AMR][1000 genomes]
rs73664903	1.00[AMR][1000 genomes]
rs73664904	1.00[AMR][1000 genomes]
rs73664905	1.00[AMR][1000 genomes]
rs73664906	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9757000-9758200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:9757200-9757800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr8:9757200-9757800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr8:9757200-9757800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:9757200-9757800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
6	chr8:9757200-9758800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:9757200-9759200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr8:9757200-9759800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:9757400-9759800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr8:9757600-9757800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
11	chr8:9757600-9757800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
12	chr8:9757600-9757800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
13	chr8:9757600-9757800	Flanking Active TSS	Fetal Brain Female	brain
14	chr8:9757600-9758000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:9757600-9758000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
16	chr8:9757600-9758000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
17	chr8:9757600-9759000	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:9757600-9759600	Flanking Active TSS	Fetal Brain Male	brain
19	chr8:9757600-9760000	Transcr. at gene 5' and 3'	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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