Variant report

Variant	rs61573224
Chromosome Location	chr8:9798274-9798275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs28528320	1.00[AMR][1000 genomes]
rs55740443	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56357738	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57660451	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58173492	1.00[AMR][1000 genomes]
rs61279137	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61678441	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6601369	1.00[AMR][1000 genomes]
rs73662550	1.00[AMR][1000 genomes]
rs73662552	1.00[AMR][1000 genomes]
rs73662601	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662602	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73664903	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73664904	1.00[AMR][1000 genomes]
rs73664905	1.00[AMR][1000 genomes]
rs73664906	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1023834	chr8:9798072-9904788	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9791800-9801800	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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