Variant report

Variant	rs73662550
Chromosome Location	chr8:9754393-9754394
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9743412..9745954-chr8:9754080..9756924,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs28528320	1.00[AMR][1000 genomes]
rs55740443	1.00[AMR][1000 genomes]
rs56357738	1.00[AMR][1000 genomes]
rs57660451	1.00[AMR][1000 genomes]
rs58173492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61279137	1.00[AMR][1000 genomes]
rs61573224	1.00[AMR][1000 genomes]
rs61678441	1.00[AMR][1000 genomes]
rs6601369	1.00[AMR][1000 genomes]
rs73662552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73662601	1.00[AMR][1000 genomes]
rs73662602	1.00[AMR][1000 genomes]
rs73664903	1.00[AMR][1000 genomes]
rs73664904	1.00[AMR][1000 genomes]
rs73664905	1.00[AMR][1000 genomes]
rs73664906	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9753000-9755600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:9753000-9757600	Enhancers	Fetal Brain Male	brain
3	chr8:9753600-9754400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr8:9753800-9755800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:9754000-9754400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:9754000-9754400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr8:9754000-9754400	Enhancers	Brain Germinal Matrix	brain
8	chr8:9754000-9755200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
9	chr8:9754000-9755400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr8:9754000-9755400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:9754000-9755600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
12	chr8:9754000-9755600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr8:9754000-9755600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:9754200-9754400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:9754200-9754600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
16	chr8:9754200-9754800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
17	chr8:9754200-9754800	Flanking Active TSS	Fetal Brain Female	brain
18	chr8:9754200-9755400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:9754200-9755400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
20	chr8:9754200-9755600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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