Variant report

Variant	rs58177091
Chromosome Location	chr11:45550796-45550797
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11038418	1.00[AMR][1000 genomes]
rs11038419	1.00[AMR][1000 genomes]
rs11038425	1.00[AMR][1000 genomes]
rs11038438	1.00[AMR][1000 genomes]
rs11038452	1.00[AMR][1000 genomes]
rs11825223	1.00[AMR][1000 genomes]
rs12276259	1.00[AMR][1000 genomes]
rs12277157	1.00[AMR][1000 genomes]
rs12279773	1.00[AMR][1000 genomes]
rs12293909	1.00[AMR][1000 genomes]
rs12294964	1.00[AMR][1000 genomes]
rs56713024	1.00[AMR][1000 genomes]
rs57019392	1.00[AMR][1000 genomes]
rs57994052	1.00[AMR][1000 genomes]
rs58296747	1.00[AMR][1000 genomes]
rs59579209	1.00[AMR][1000 genomes]
rs59763062	1.00[AMR][1000 genomes]
rs60799662	1.00[AMR][1000 genomes]
rs73452198	1.00[AMR][1000 genomes]
rs73454175	1.00[AMR][1000 genomes]
rs73456092	1.00[AMR][1000 genomes]
rs73458136	1.00[AMR][1000 genomes]
rs73458172	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45540200-45560200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45547200-45552800	Weak transcription	Fetal Brain Female	brain
3	chr11:45548400-45551000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:45548800-45551000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:45548800-45551000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:45548800-45551200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr11:45549000-45551200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:45550600-45553200	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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