Variant report

Variant	rs11825223
Chromosome Location	chr11:45408742-45408743
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11038418	1.00[AMR][1000 genomes]
rs11038419	1.00[AMR][1000 genomes]
rs11038425	1.00[AMR][1000 genomes]
rs11038438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11038452	1.00[AMR][1000 genomes]
rs12276259	1.00[AMR][1000 genomes]
rs12277157	1.00[AMR][1000 genomes]
rs12279773	1.00[AMR][1000 genomes]
rs12292233	1.00[AMR][1000 genomes]
rs12293909	1.00[AMR][1000 genomes]
rs12294964	1.00[AMR][1000 genomes]
rs56713024	1.00[AMR][1000 genomes]
rs57019392	1.00[AMR][1000 genomes]
rs57994052	1.00[AMR][1000 genomes]
rs58177091	1.00[AMR][1000 genomes]
rs58296747	1.00[AMR][1000 genomes]
rs59579209	1.00[AMR][1000 genomes]
rs59763062	1.00[AMR][1000 genomes]
rs60799662	1.00[AMR][1000 genomes]
rs73452123	1.00[AMR][1000 genomes]
rs73452198	1.00[AMR][1000 genomes]
rs73454175	1.00[AMR][1000 genomes]
rs73456092	1.00[AMR][1000 genomes]
rs73458136	1.00[AMR][1000 genomes]
rs73458172	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467869	chr11:45389225-45415035	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv554185	chr11:45389225-45415035	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11825223	FAM184A	trans	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45403200-45410000	Enhancers	Fetal Thymus	thymus
2	chr11:45405400-45434800	Weak transcription	Right Atrium	heart
3	chr11:45406000-45408800	Enhancers	Fetal Brain Female	brain
4	chr11:45406000-45409200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:45407000-45421000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:45407600-45414000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:45408200-45408800	Enhancers	Thymus	Thymus
8	chr11:45408200-45410800	Enhancers	Fetal Brain Male	brain
9	chr11:45408400-45409400	Flanking Active TSS	Brain Germinal Matrix	brain
10	chr11:45408600-45408800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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