Variant report

Variant	rs56713024
Chromosome Location	chr11:45473837-45473838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11038418	1.00[AMR][1000 genomes]
rs11038419	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11038425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11038438	1.00[AMR][1000 genomes]
rs11038452	1.00[AMR][1000 genomes]
rs11825223	1.00[AMR][1000 genomes]
rs12276259	1.00[AMR][1000 genomes]
rs12277157	1.00[AMR][1000 genomes]
rs12279773	1.00[AMR][1000 genomes]
rs12292233	1.00[AMR][1000 genomes]
rs12293909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294964	1.00[AMR][1000 genomes]
rs57019392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57994052	1.00[AMR][1000 genomes]
rs58177091	1.00[AMR][1000 genomes]
rs58296747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59579209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59763062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60799662	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73452123	1.00[AMR][1000 genomes]
rs73452198	1.00[AMR][1000 genomes]
rs73454175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456092	1.00[AMR][1000 genomes]
rs73458136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049520	chr11:45430802-45494235	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv541026	chr11:45430802-45494235	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1050657	chr11:45455431-45484320	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1035430	chr11:45455431-45487231	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv1035254	chr11:45457183-45487231	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv1053919	chr11:45457920-45506491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv541027	chr11:45457920-45506491	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3380895	chr11:45473822-45474393	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45466600-45474200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45472200-45477000	Weak transcription	Right Atrium	heart
3	chr11:45472400-45474000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:45473600-45478600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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