Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45441248..45443305-chr11:45447656..45449205,2	K562	blood:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11038392	1.00[EUR][1000 genomes]
rs11038418	1.00[AMR][1000 genomes]
rs11038419	1.00[AMR][1000 genomes]
rs11038425	1.00[AMR][1000 genomes]
rs11038438	1.00[AMR][1000 genomes]
rs11038452	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820172	1.00[EUR][1000 genomes]
rs11821506	1.00[EUR][1000 genomes]
rs11824171	1.00[EUR][1000 genomes]
rs11825223	1.00[AMR][1000 genomes]
rs11825398	1.00[EUR][1000 genomes]
rs11826256	1.00[EUR][1000 genomes]
rs12276259	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277157	1.00[AMR][1000 genomes]
rs12279773	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12284610	1.00[EUR][1000 genomes]
rs12292233	1.00[AMR][1000 genomes]
rs12293909	1.00[AMR][1000 genomes]
rs12294964	1.00[AMR][1000 genomes]
rs56713024	1.00[AMR][1000 genomes]
rs57019392	1.00[AMR][1000 genomes]
rs57820981	1.00[EUR][1000 genomes]
rs57994052	1.00[AMR][1000 genomes]
rs58177091	1.00[AMR][1000 genomes]
rs58296747	1.00[AMR][1000 genomes]
rs59579209	1.00[AMR][1000 genomes]
rs59763062	1.00[AMR][1000 genomes]
rs60799662	1.00[AMR][1000 genomes]
rs73452123	1.00[AMR][1000 genomes]
rs73452198	1.00[AMR][1000 genomes]
rs73454175	1.00[AMR][1000 genomes]
rs73458136	1.00[AMR][1000 genomes]
rs73458172	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv306	chr11:45414044-45444431	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1049520	chr11:45430802-45494235	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv541026	chr11:45430802-45494235	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45434200-45444000	Weak transcription	Brain Germinal Matrix	brain
2	chr11:45436400-45456800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: