Variant report

Variant	rs73452123
Chromosome Location	chr11:45320296-45320297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11038418	1.00[AMR][1000 genomes]
rs11038419	1.00[AMR][1000 genomes]
rs11038425	1.00[AMR][1000 genomes]
rs11038438	1.00[AMR][1000 genomes]
rs11038452	1.00[AMR][1000 genomes]
rs11825223	1.00[AMR][1000 genomes]
rs12276259	1.00[AMR][1000 genomes]
rs12277157	1.00[AMR][1000 genomes]
rs12279773	1.00[AMR][1000 genomes]
rs12292233	1.00[AMR][1000 genomes]
rs12293909	1.00[AMR][1000 genomes]
rs56713024	1.00[AMR][1000 genomes]
rs57019392	1.00[AMR][1000 genomes]
rs57994052	1.00[AMR][1000 genomes]
rs58296747	1.00[AMR][1000 genomes]
rs59579209	1.00[AMR][1000 genomes]
rs59763062	1.00[AMR][1000 genomes]
rs60799662	1.00[AMR][1000 genomes]
rs73452198	1.00[AMR][1000 genomes]
rs73454175	1.00[AMR][1000 genomes]
rs73456092	1.00[AMR][1000 genomes]
rs73458136	1.00[AMR][1000 genomes]
rs73458172	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45320200-45320400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:45320200-45320400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr11:45320200-45320600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:45320200-45320600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:45320200-45320600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:45320200-45320800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr11:45320200-45320800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:45320200-45320800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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