Variant report

Variant	rs58273697
Chromosome Location	chr19:23577394-23577395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:23576348..23579660-chr19:23867719..23870587,3	MCF-7	breast:
2	chr19:23571146..23573840-chr19:23574386..23577614,3	K562	blood:

Variant related genes	Relation type
ENSG00000197372	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs58575480	1.00[AFR][1000 genomes]
rs58749366	1.00[AFR][1000 genomes]
rs59454656	0.83[AFR][1000 genomes]
rs59831979	1.00[AFR][1000 genomes]
rs73563449	1.00[AFR][1000 genomes]
rs73563476	1.00[AFR][1000 genomes]
rs73563479	1.00[AFR][1000 genomes]
rs73563487	1.00[AFR][1000 genomes]
rs73563490	1.00[AFR][1000 genomes]
rs73563492	1.00[AFR][1000 genomes]
rs73565003	1.00[AFR][1000 genomes]
rs73565009	1.00[AFR][1000 genomes]
rs73565023	1.00[AFR][1000 genomes]
rs73565040	1.00[AFR][1000 genomes]
rs73565049	1.00[AFR][1000 genomes]
rs73565050	1.00[AFR][1000 genomes]
rs73565051	1.00[AFR][1000 genomes]
rs73567463	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34470	chr19:22922549-23659458	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
2	esv34907	chr19:22922549-23683097	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	80 gene(s)	inside rSNPs	diseases
3	nsv9686	chr19:22989454-23653750	Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	76 gene(s)	inside rSNPs	diseases
4	nsv817826	chr19:23000745-23620632	Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	75 gene(s)	inside rSNPs	diseases
5	esv3693269	chr19:23000745-23652839	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	76 gene(s)	inside rSNPs	diseases
6	esv2758491	chr19:23071299-23940467	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1065157	chr19:23091826-23812323	Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
8	nsv543959	chr19:23091826-23812323	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
9	esv3429878	chr19:23246650-23590744	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
10	esv3410568	chr19:23246670-23590714	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
11	esv3433243	chr19:23249108-23585814	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
12	esv3387823	chr19:23265885-23590028	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
13	nsv579034	chr19:23387788-23610784	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
14	esv3332495	chr19:23451842-23598069	Active TSS Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
15	esv3319024	chr19:23456003-23598068	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
16	esv3319025	chr19:23456003-23598068	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
17	esv3447830	chr19:23465035-23610690	Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
18	esv3382338	chr19:23476728-23631356	Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
19	esv3323302	chr19:23477342-23648545	ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
20	esv3523857	chr19:23477614-23632199	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
21	esv3523858	chr19:23477614-23632199	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
22	esv3334120	chr19:23545829-23837686	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
23	nsv960817	chr19:23556437-23606658	ZNF genes & repeats Genic enhancers Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
24	nsv1064929	chr19:23559483-23827735	Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
25	nsv1057474	chr19:23563612-23812441	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
26	nsv543962	chr19:23563612-23812441	ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:23575600-23578800	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr19:23576000-23577400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr19:23576000-23577600	Enhancers	Spleen	Spleen
4	chr19:23576000-23578200	Transcr. at gene 5' and 3'	Dnd41	blood
5	chr19:23576200-23578400	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr19:23576200-23578400	Active TSS	Muscle Satellite Cultured Cells	--
7	chr19:23576200-23578600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr19:23576400-23577400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr19:23576400-23578400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr19:23576400-23578400	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr19:23576400-23578400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr19:23576400-23578400	Active TSS	Colonic Mucosa	Colon
13	chr19:23576400-23578400	Active TSS	Fetal Intestine Large	intestine
14	chr19:23576400-23578400	Active TSS	Fetal Intestine Small	intestine
15	chr19:23576400-23578600	Active TSS	HSMMtube	muscle
16	chr19:23576600-23577400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr19:23576600-23577800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr19:23576600-23578400	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr19:23576600-23578400	Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr19:23576600-23578600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr19:23576600-23578600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr19:23576600-23578800	Active TSS	Hela-S3	cervix
23	chr19:23576800-23577400	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr19:23576800-23577400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr19:23576800-23577400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr19:23576800-23577400	Flanking Active TSS	Brain Cingulate Gyrus	brain
27	chr19:23576800-23577600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
28	chr19:23576800-23578400	Active TSS	H9 Cell Line	embryonic stem cell
29	chr19:23576800-23578400	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr19:23576800-23578400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr19:23576800-23578400	Active TSS	Left Ventricle	heart
32	chr19:23576800-23578400	Active TSS	Right Ventricle	heart
33	chr19:23576800-23578600	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr19:23576800-23578600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr19:23576800-23578600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr19:23576800-23578600	Active TSS	Aorta	Aorta
37	chr19:23576800-23578600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr19:23576800-23578600	Active TSS	Right Atrium	heart
39	chr19:23576800-23578600	Active TSS	Monocytes-CD14+_RO01746	blood
40	chr19:23576800-23578600	Active TSS	NHLF	lung
41	chr19:23576800-23578800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr19:23576800-23578800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr19:23576800-23578800	Active TSS	HSMM	muscle
44	chr19:23577000-23577400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
45	chr19:23577000-23577400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr19:23577000-23577400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr19:23577000-23577400	Flanking Active TSS	Fetal Muscle Leg	muscle
48	chr19:23577000-23577400	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr19:23577000-23577600	Flanking Active TSS	Primary B cells from cord blood	blood
50	chr19:23577000-23577600	Flanking Active TSS	Primary hematopoietic stem cells	blood

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