Variant report

Variant	rs58321689
Chromosome Location	chr17:66741188-66741189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs60592724	0.80[AFR][1000 genomes]
rs73353022	0.80[AFR][1000 genomes]
rs73353024	0.93[AFR][1000 genomes]
rs73353027	0.93[AFR][1000 genomes]
rs73353028	0.80[AFR][1000 genomes]
rs73353037	0.80[AFR][1000 genomes]
rs73353038	0.80[AFR][1000 genomes]
rs73353039	0.80[AFR][1000 genomes]
rs73353098	0.80[AFR][1000 genomes]
rs73355204	0.80[AFR][1000 genomes]
rs73355207	0.80[AFR][1000 genomes]
rs73355209	0.80[AFR][1000 genomes]
rs73355212	0.80[AFR][1000 genomes]
rs73355216	0.80[AFR][1000 genomes]
rs73355217	0.80[AFR][1000 genomes]
rs73355219	0.80[AFR][1000 genomes]
rs73355223	0.80[AFR][1000 genomes]
rs73355226	0.80[AFR][1000 genomes]
rs73355228	0.80[AFR][1000 genomes]
rs73355234	0.80[AFR][1000 genomes]
rs73355236	0.80[AFR][1000 genomes]
rs73355237	0.80[AFR][1000 genomes]
rs73355244	0.93[AFR][1000 genomes]
rs73355247	0.93[AFR][1000 genomes]
rs73355249	0.93[AFR][1000 genomes]
rs73355254	0.93[AFR][1000 genomes]
rs73355255	0.93[AFR][1000 genomes]
rs73355256	0.93[AFR][1000 genomes]
rs73355257	0.87[AFR][1000 genomes]
rs73355268	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66737600-66741200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr17:66740000-66742400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr17:66740800-66741800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr17:66741000-66741600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr17:66741000-66741800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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