Variant report
| Variant | rs73355207 |
|---|---|
| Chromosome Location | chr17:66737515-66737516 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:66737087..66737621-chr17:66755772..66756274,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:44)
| rs_ID | r2[population] |
|---|---|
| rs57317803 | 0.88[AFR][1000 genomes] |
| rs58321689 | 0.80[AFR][1000 genomes] |
| rs59333083 | 0.88[AFR][1000 genomes] |
| rs59415282 | 0.96[AFR][1000 genomes] |
| rs60592724 | 1.00[AFR][1000 genomes] |
| rs60827492 | 0.88[AFR][1000 genomes] |
| rs61363648 | 0.92[AFR][1000 genomes] |
| rs61708871 | 0.92[AFR][1000 genomes] |
| rs73351188 | 0.88[AFR][1000 genomes] |
| rs73351198 | 0.88[AFR][1000 genomes] |
| rs73353006 | 0.80[AFR][1000 genomes] |
| rs73353013 | 0.88[AFR][1000 genomes] |
| rs73353016 | 0.88[AFR][1000 genomes] |
| rs73353019 | 0.88[AFR][1000 genomes] |
| rs73353022 | 1.00[AFR][1000 genomes] |
| rs73353024 | 0.86[AFR][1000 genomes] |
| rs73353027 | 0.86[AFR][1000 genomes] |
| rs73353028 | 1.00[AFR][1000 genomes] |
| rs73353037 | 1.00[AFR][1000 genomes] |
| rs73353038 | 1.00[AFR][1000 genomes] |
| rs73353039 | 1.00[AFR][1000 genomes] |
| rs73353098 | 1.00[AFR][1000 genomes] |
| rs73355204 | 1.00[AFR][1000 genomes] |
| rs73355209 | 1.00[AFR][1000 genomes] |
| rs73355212 | 1.00[AFR][1000 genomes] |
| rs73355216 | 1.00[AFR][1000 genomes] |
| rs73355217 | 1.00[AFR][1000 genomes] |
| rs73355219 | 1.00[AFR][1000 genomes] |
| rs73355223 | 1.00[AFR][1000 genomes] |
| rs73355226 | 1.00[AFR][1000 genomes] |
| rs73355228 | 1.00[AFR][1000 genomes] |
| rs73355234 | 1.00[AFR][1000 genomes] |
| rs73355236 | 1.00[AFR][1000 genomes] |
| rs73355237 | 1.00[AFR][1000 genomes] |
| rs73355240 | 0.92[AFR][1000 genomes] |
| rs73355242 | 0.88[AFR][1000 genomes] |
| rs73355244 | 0.86[AFR][1000 genomes] |
| rs73355247 | 0.86[AFR][1000 genomes] |
| rs73355249 | 0.86[AFR][1000 genomes] |
| rs73355254 | 0.86[AFR][1000 genomes] |
| rs73355255 | 0.86[AFR][1000 genomes] |
| rs73355256 | 0.86[AFR][1000 genomes] |
| rs73355257 | 0.80[AFR][1000 genomes] |
| rs73355268 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1067334 | chr17:66695039-67221585 | Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv543411 | chr17:66695039-67221585 | Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv523831 | chr17:66733138-66738905 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:66736800-66737600 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr17:66736800-66737600 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 3 | chr17:66737000-66737600 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
