Variant report
| Variant | rs73351198 |
|---|---|
| Chromosome Location | chr17:66720910-66720911 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:66716538..66719637-chr17:66719938..66724148,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs57317803 | 1.00[AFR][1000 genomes] |
| rs59333083 | 1.00[AFR][1000 genomes] |
| rs59415282 | 0.84[AFR][1000 genomes] |
| rs60592724 | 0.88[AFR][1000 genomes] |
| rs60827492 | 1.00[AFR][1000 genomes] |
| rs61363648 | 0.96[AFR][1000 genomes] |
| rs61708871 | 0.96[AFR][1000 genomes] |
| rs73351188 | 1.00[AFR][1000 genomes] |
| rs73353006 | 0.92[AFR][1000 genomes] |
| rs73353007 | 0.82[AFR][1000 genomes] |
| rs73353013 | 1.00[AFR][1000 genomes] |
| rs73353016 | 1.00[AFR][1000 genomes] |
| rs73353019 | 1.00[AFR][1000 genomes] |
| rs73353022 | 0.88[AFR][1000 genomes] |
| rs73353028 | 0.88[AFR][1000 genomes] |
| rs73353037 | 0.88[AFR][1000 genomes] |
| rs73353038 | 0.88[AFR][1000 genomes] |
| rs73353039 | 0.88[AFR][1000 genomes] |
| rs73353098 | 0.88[AFR][1000 genomes] |
| rs73355204 | 0.88[AFR][1000 genomes] |
| rs73355207 | 0.88[AFR][1000 genomes] |
| rs73355209 | 0.88[AFR][1000 genomes] |
| rs73355212 | 0.88[AFR][1000 genomes] |
| rs73355216 | 0.88[AFR][1000 genomes] |
| rs73355217 | 0.88[AFR][1000 genomes] |
| rs73355219 | 0.88[AFR][1000 genomes] |
| rs73355223 | 0.88[AFR][1000 genomes] |
| rs73355226 | 0.88[AFR][1000 genomes] |
| rs73355228 | 0.88[AFR][1000 genomes] |
| rs73355234 | 0.88[AFR][1000 genomes] |
| rs73355236 | 0.88[AFR][1000 genomes] |
| rs73355237 | 0.88[AFR][1000 genomes] |
| rs73355240 | 0.81[AFR][1000 genomes] |
| rs73355242 | 1.00[AFR][1000 genomes] |
| rs73355268 | 0.88[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1067334 | chr17:66695039-67221585 | Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv543411 | chr17:66695039-67221585 | Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:66715200-66721200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr17:66716000-66721200 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 3 | chr17:66720800-66721000 | Enhancers | HUES64 Cell Line | embryonic stem cell |
