Variant report

Variant	rs73353016
Chromosome Location	chr17:66733071-66733072
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs57317803	1.00[AFR][1000 genomes]
rs59333083	1.00[AFR][1000 genomes]
rs59415282	0.84[AFR][1000 genomes]
rs60592724	0.88[AFR][1000 genomes]
rs60827492	1.00[AFR][1000 genomes]
rs61363648	0.96[AFR][1000 genomes]
rs61708871	0.96[AFR][1000 genomes]
rs73351188	1.00[AFR][1000 genomes]
rs73351198	1.00[AFR][1000 genomes]
rs73353006	0.92[AFR][1000 genomes]
rs73353007	0.82[AFR][1000 genomes]
rs73353013	1.00[AFR][1000 genomes]
rs73353019	1.00[AFR][1000 genomes]
rs73353022	0.88[AFR][1000 genomes]
rs73353028	0.88[AFR][1000 genomes]
rs73353037	0.88[AFR][1000 genomes]
rs73353038	0.88[AFR][1000 genomes]
rs73353039	0.88[AFR][1000 genomes]
rs73353098	0.88[AFR][1000 genomes]
rs73355204	0.88[AFR][1000 genomes]
rs73355207	0.88[AFR][1000 genomes]
rs73355209	0.88[AFR][1000 genomes]
rs73355212	0.88[AFR][1000 genomes]
rs73355216	0.88[AFR][1000 genomes]
rs73355217	0.88[AFR][1000 genomes]
rs73355219	0.88[AFR][1000 genomes]
rs73355223	0.88[AFR][1000 genomes]
rs73355226	0.88[AFR][1000 genomes]
rs73355228	0.88[AFR][1000 genomes]
rs73355234	0.88[AFR][1000 genomes]
rs73355236	0.88[AFR][1000 genomes]
rs73355237	0.88[AFR][1000 genomes]
rs73355240	0.81[AFR][1000 genomes]
rs73355242	1.00[AFR][1000 genomes]
rs73355268	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66729000-66734600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr17:66729800-66733400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr17:66730400-66734000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr17:66730800-66733600	Weak transcription	Fetal Lung	lung
5	chr17:66731000-66736800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:66731200-66734000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr17:66731400-66733400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr17:66731400-66733400	Weak transcription	Left Ventricle	heart
9	chr17:66731400-66733400	Weak transcription	Ovary	ovary
10	chr17:66731400-66733600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr17:66731400-66733800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr17:66731400-66733800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr17:66731400-66734200	Weak transcription	HSMMtube	muscle
14	chr17:66731600-66733600	Weak transcription	Fetal Heart	heart
15	chr17:66731600-66734000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr17:66731600-66734000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr17:66732200-66733400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr17:66733000-66733800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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