Variant report

Variant	rs61708871
Chromosome Location	chr17:66735116-66735117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs57317803	0.96[AFR][1000 genomes]
rs59333083	0.96[AFR][1000 genomes]
rs59415282	0.88[AFR][1000 genomes]
rs60592724	0.92[AFR][1000 genomes]
rs60827492	0.96[AFR][1000 genomes]
rs61363648	1.00[AFR][1000 genomes]
rs73351188	0.96[AFR][1000 genomes]
rs73351198	0.96[AFR][1000 genomes]
rs73353006	0.88[AFR][1000 genomes]
rs73353013	0.96[AFR][1000 genomes]
rs73353016	0.96[AFR][1000 genomes]
rs73353019	0.96[AFR][1000 genomes]
rs73353022	0.92[AFR][1000 genomes]
rs73353028	0.92[AFR][1000 genomes]
rs73353037	0.92[AFR][1000 genomes]
rs73353038	0.92[AFR][1000 genomes]
rs73353039	0.92[AFR][1000 genomes]
rs73353098	0.92[AFR][1000 genomes]
rs73355204	0.92[AFR][1000 genomes]
rs73355207	0.92[AFR][1000 genomes]
rs73355209	0.92[AFR][1000 genomes]
rs73355212	0.92[AFR][1000 genomes]
rs73355216	0.92[AFR][1000 genomes]
rs73355217	0.92[AFR][1000 genomes]
rs73355219	0.92[AFR][1000 genomes]
rs73355223	0.92[AFR][1000 genomes]
rs73355226	0.92[AFR][1000 genomes]
rs73355228	0.92[AFR][1000 genomes]
rs73355234	0.92[AFR][1000 genomes]
rs73355236	0.92[AFR][1000 genomes]
rs73355237	0.92[AFR][1000 genomes]
rs73355240	0.85[AFR][1000 genomes]
rs73355242	0.96[AFR][1000 genomes]
rs73355268	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv523831	chr17:66733138-66738905	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66731000-66736800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:66734000-66735200	Enhancers	Fetal Brain Male	brain
3	chr17:66734200-66736800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr17:66734600-66735200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr17:66734600-66736400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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