Variant report

Variant	rs57317803
Chromosome Location	chr17:66731436-66731437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs59333083	1.00[AFR][1000 genomes]
rs59415282	0.84[AFR][1000 genomes]
rs60592724	0.88[AFR][1000 genomes]
rs60827492	1.00[AFR][1000 genomes]
rs61363648	0.96[AFR][1000 genomes]
rs61708871	0.96[AFR][1000 genomes]
rs73351188	1.00[AFR][1000 genomes]
rs73351198	1.00[AFR][1000 genomes]
rs73353006	0.92[AFR][1000 genomes]
rs73353007	0.82[AFR][1000 genomes]
rs73353013	1.00[AFR][1000 genomes]
rs73353016	1.00[AFR][1000 genomes]
rs73353019	1.00[AFR][1000 genomes]
rs73353022	0.88[AFR][1000 genomes]
rs73353028	0.88[AFR][1000 genomes]
rs73353037	0.88[AFR][1000 genomes]
rs73353038	0.88[AFR][1000 genomes]
rs73353039	0.88[AFR][1000 genomes]
rs73353098	0.88[AFR][1000 genomes]
rs73355204	0.88[AFR][1000 genomes]
rs73355207	0.88[AFR][1000 genomes]
rs73355209	0.88[AFR][1000 genomes]
rs73355212	0.88[AFR][1000 genomes]
rs73355216	0.88[AFR][1000 genomes]
rs73355217	0.88[AFR][1000 genomes]
rs73355219	0.88[AFR][1000 genomes]
rs73355223	0.88[AFR][1000 genomes]
rs73355226	0.88[AFR][1000 genomes]
rs73355228	0.88[AFR][1000 genomes]
rs73355234	0.88[AFR][1000 genomes]
rs73355236	0.88[AFR][1000 genomes]
rs73355237	0.88[AFR][1000 genomes]
rs73355240	0.81[AFR][1000 genomes]
rs73355242	1.00[AFR][1000 genomes]
rs73355268	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66728200-66731600	Enhancers	Fetal Heart	heart
2	chr17:66728800-66731600	Enhancers	Adipose Nuclei	Adipose
3	chr17:66728800-66731600	Enhancers	NHDF-Ad	bronchial
4	chr17:66729000-66732200	Enhancers	Aorta	Aorta
5	chr17:66729000-66734600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr17:66729200-66731600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr17:66729800-66733400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr17:66730000-66731600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr17:66730000-66731600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr17:66730400-66734000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr17:66730800-66733000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr17:66730800-66733600	Weak transcription	Fetal Lung	lung
13	chr17:66731000-66732600	Weak transcription	Pancreas	Pancrea
14	chr17:66731000-66736800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:66731200-66734000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr17:66731400-66733400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr17:66731400-66733400	Weak transcription	Left Ventricle	heart
18	chr17:66731400-66733400	Weak transcription	Ovary	ovary
19	chr17:66731400-66733600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr17:66731400-66733800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr17:66731400-66733800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr17:66731400-66734200	Weak transcription	HSMMtube	muscle

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