Variant report

Variant	rs73355234
Chromosome Location	chr17:66738964-66738965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs57317803	0.88[AFR][1000 genomes]
rs58321689	0.80[AFR][1000 genomes]
rs59333083	0.88[AFR][1000 genomes]
rs59415282	0.96[AFR][1000 genomes]
rs60592724	1.00[AFR][1000 genomes]
rs60827492	0.88[AFR][1000 genomes]
rs61363648	0.92[AFR][1000 genomes]
rs61708871	0.92[AFR][1000 genomes]
rs73351188	0.88[AFR][1000 genomes]
rs73351198	0.88[AFR][1000 genomes]
rs73353006	0.80[AFR][1000 genomes]
rs73353013	0.88[AFR][1000 genomes]
rs73353016	0.88[AFR][1000 genomes]
rs73353019	0.88[AFR][1000 genomes]
rs73353022	1.00[AFR][1000 genomes]
rs73353024	0.86[AFR][1000 genomes]
rs73353027	0.86[AFR][1000 genomes]
rs73353028	1.00[AFR][1000 genomes]
rs73353037	1.00[AFR][1000 genomes]
rs73353038	1.00[AFR][1000 genomes]
rs73353039	1.00[AFR][1000 genomes]
rs73353098	1.00[AFR][1000 genomes]
rs73355204	1.00[AFR][1000 genomes]
rs73355207	1.00[AFR][1000 genomes]
rs73355209	1.00[AFR][1000 genomes]
rs73355212	1.00[AFR][1000 genomes]
rs73355216	1.00[AFR][1000 genomes]
rs73355217	1.00[AFR][1000 genomes]
rs73355219	1.00[AFR][1000 genomes]
rs73355223	1.00[AFR][1000 genomes]
rs73355226	1.00[AFR][1000 genomes]
rs73355228	1.00[AFR][1000 genomes]
rs73355236	1.00[AFR][1000 genomes]
rs73355237	1.00[AFR][1000 genomes]
rs73355240	0.92[AFR][1000 genomes]
rs73355242	0.88[AFR][1000 genomes]
rs73355244	0.86[AFR][1000 genomes]
rs73355247	0.86[AFR][1000 genomes]
rs73355249	0.86[AFR][1000 genomes]
rs73355254	0.86[AFR][1000 genomes]
rs73355255	0.86[AFR][1000 genomes]
rs73355256	0.86[AFR][1000 genomes]
rs73355257	0.80[AFR][1000 genomes]
rs73355268	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66737600-66741000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr17:66737600-66741200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr17:66738800-66739200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr17:66738800-66739200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr17:66738800-66739200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr17:66738800-66739200	Enhancers	HMEC	breast
7	chr17:66738800-66739600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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