Variant report

Variant	rs58332182
Chromosome Location	chr6:56886965-56886966
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56885537..56887051-chr6:56909421..56911786,2	K562	blood:
2	chr6:56882958..56887865-chr6:56889010..56894345,6	K562	blood:
3	chr6:56876462..56883881-chr6:56884128..56888992,9	K562	blood:
4	chr6:56885077..56887433-chr6:56918362..56920349,2	K562	blood:
5	chr6:56818545..56822345-chr6:56886913..56890187,5	K562	blood:

Variant related genes	Relation type
ENSG00000151914	Chromatin interaction
ENSG00000151917	Chromatin interaction
ENSG00000168116	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10498814	0.87[EUR][1000 genomes]
rs12175661	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13205191	0.87[EUR][1000 genomes]
rs16888268	0.88[EUR][1000 genomes]
rs16888316	0.80[AMR][1000 genomes]
rs17758527	0.87[EUR][1000 genomes]
rs17758663	0.88[EUR][1000 genomes]
rs1839837	0.88[EUR][1000 genomes]
rs1993118	0.83[AMR][1000 genomes]
rs2306011	0.88[EUR][1000 genomes]
rs28498151	0.88[EUR][1000 genomes]
rs4576249	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57994994	0.88[EUR][1000 genomes]
rs58099889	0.88[EUR][1000 genomes]
rs59106338	0.88[EUR][1000 genomes]
rs60401134	0.88[EUR][1000 genomes]
rs60910121	0.83[EUR][1000 genomes]
rs61740375	0.80[AMR][1000 genomes]
rs62411417	0.83[EUR][1000 genomes]
rs62411418	0.83[EUR][1000 genomes]
rs62411419	0.83[EUR][1000 genomes]
rs62411420	0.87[EUR][1000 genomes]
rs62411421	0.87[EUR][1000 genomes]
rs62411422	0.87[EUR][1000 genomes]
rs62411423	0.87[EUR][1000 genomes]
rs62411425	0.87[EUR][1000 genomes]
rs62411430	0.87[EUR][1000 genomes]
rs62415861	0.80[AMR][1000 genomes]
rs62415863	0.80[AMR][1000 genomes]
rs62415864	0.80[AMR][1000 genomes]
rs62415878	0.80[AMR][1000 genomes]
rs62415879	0.80[AMR][1000 genomes]
rs62415880	0.80[AMR][1000 genomes]
rs62415885	0.80[AMR][1000 genomes]
rs62417377	0.87[EUR][1000 genomes]
rs62417378	0.85[EUR][1000 genomes]
rs62417385	0.86[EUR][1000 genomes]
rs62417430	0.86[AMR][1000 genomes]
rs72867038	0.80[AMR][1000 genomes]
rs9296860	0.80[AMR][1000 genomes]
rs9349842	0.88[EUR][1000 genomes]
rs9357936	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9367700	0.88[EUR][1000 genomes]
rs9367701	0.88[EUR][1000 genomes]
rs9367702	0.88[EUR][1000 genomes]
rs9367710	0.80[AMR][1000 genomes]
rs9367711	0.80[AMR][1000 genomes]
rs9370550	0.88[EUR][1000 genomes]
rs9370553	0.88[EUR][1000 genomes]
rs9370554	0.88[EUR][1000 genomes]
rs9370559	0.80[AMR][1000 genomes]
rs9370563	0.80[AMR][1000 genomes]
rs9382673	0.88[EUR][1000 genomes]
rs9382684	0.80[AMR][1000 genomes]
rs9396238	0.88[EUR][1000 genomes]
rs9396240	0.88[EUR][1000 genomes]
rs9396245	0.88[EUR][1000 genomes]
rs9396251	0.84[EUR][1000 genomes]
rs9396254	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9396255	0.86[AMR][1000 genomes]
rs9464411	0.88[EUR][1000 genomes]
rs9464412	0.88[EUR][1000 genomes]
rs9464413	0.88[EUR][1000 genomes]
rs9464418	0.80[AMR][1000 genomes]
rs9475757	0.88[EUR][1000 genomes]
rs9475761	0.88[EUR][1000 genomes]
rs9475762	0.88[EUR][1000 genomes]
rs9475768	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	esv3430228	chr6:56830972-57079281	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56858600-56889400	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:56864600-56890200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:56878600-56905400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:56879000-56891600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:56880800-56888400	Weak transcription	Aorta	Aorta
6	chr6:56883400-56888800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:56885000-56887800	Weak transcription	K562	blood
8	chr6:56886000-56894000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:56886200-56887000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:56886200-56889400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:56886400-56887800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:56886400-56887800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:56886400-56890200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:56886400-56893200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:56886600-56887000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:56886600-56887200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:56886600-56887400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:56886800-56890000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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