Variant report

Variant	rs58337909
Chromosome Location	chr6:167561631-167561632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr6:167561601-167561784	GM12878	blood:	n/a	n/a
2	REST	chr6:167561271-167561928	H1-neurons	neurons:	n/a	n/a
3	POLR2A	chr6:167561321-167561965	H1-neurons	neurons:	n/a	n/a
4	REST	chr6:167561209-167561951	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167547071..167549495-chr6:167560421..167562886,2	K562	blood:

Variant related genes	Relation type
TCP10L2	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs61592390	0.84[EUR][1000 genomes]
rs6902381	0.80[EUR][1000 genomes]
rs6903530	0.80[EUR][1000 genomes]
rs6903881	0.80[EUR][1000 genomes]
rs6905921	0.84[EUR][1000 genomes]
rs6909397	0.80[EUR][1000 genomes]
rs6914502	0.80[EUR][1000 genomes]
rs6916776	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6929910	0.80[EUR][1000 genomes]
rs6931712	0.84[EUR][1000 genomes]
rs73025424	0.84[EUR][1000 genomes]
rs73025426	0.84[EUR][1000 genomes]
rs73025434	0.84[EUR][1000 genomes]
rs9459889	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
4	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
6	esv2752099	chr6:167448181-167579102	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1018193	chr6:167491589-167797294	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv538544	chr6:167491589-167797294	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv469673	chr6:167500376-167658532	Flanking Active TSS Genic enhancers Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv482439	chr6:167500376-167658532	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv2758094	chr6:167501204-167845935	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	esv2759492	chr6:167501204-168176733	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv482873	chr6:167521620-167679133	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167534000-167573400	Weak transcription	Right Atrium	heart
2	chr6:167543400-167565000	Weak transcription	Spleen	Spleen
3	chr6:167558600-167562000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:167559000-167561800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:167559000-167562000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:167559400-167562000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr6:167560000-167564600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:167560200-167564400	Weak transcription	Primary B cells from cord blood	blood
9	chr6:167560400-167562000	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr6:167560600-167564000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:167560800-167561800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr6:167561000-167561800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr6:167561000-167561800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:167561000-167562000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:167561000-167562200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:167561000-167562200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr6:167561400-167561800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:167561400-167562000	Enhancers	GM12878-XiMat	blood
19	chr6:167561600-167564400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:167561600-167566600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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