Variant report

Variant	rs6905921
Chromosome Location	chr6:167559789-167559790
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POU2F2	chr6:167559708-167559993	GM12891	blood:	n/a	n/a
2	POLR2A	chr6:167559590-167560129	GM12891	blood:	n/a	n/a
3	POLR2A	chr6:167559652-167560053	GM12891	blood:	n/a	n/a
4	POLR2A	chr6:167559659-167560013	GM12891	blood:	n/a	n/a
5	TAF1	chr6:167559720-167559966	GM12891	blood:	n/a	n/a
6	POLR2A	chr6:167559737-167559992	GM12891	blood:	n/a	n/a
7	POLR2A	chr6:167559669-167560039	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
TCP10L2	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11575083	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17860865	0.91[EUR][1000 genomes]
rs17860868	0.91[EUR][1000 genomes]
rs3092997	0.91[EUR][1000 genomes]
rs3092998	0.91[EUR][1000 genomes]
rs3092999	0.91[EUR][1000 genomes]
rs3093003	0.91[EUR][1000 genomes]
rs3093005	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs3093011	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35609966	0.87[EUR][1000 genomes]
rs56019840	0.91[EUR][1000 genomes]
rs58337909	0.84[EUR][1000 genomes]
rs61592390	1.00[EUR][1000 genomes]
rs6902381	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6903530	0.96[EUR][1000 genomes]
rs6903881	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6909397	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6911291	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6914502	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6916776	0.91[EUR][1000 genomes]
rs6929910	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6931699	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6931712	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73025424	1.00[EUR][1000 genomes]
rs73025426	1.00[EUR][1000 genomes]
rs73025427	0.91[EUR][1000 genomes]
rs73025434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7750651	0.91[EUR][1000 genomes]
rs9457277	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9459889	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
4	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
6	esv2752099	chr6:167448181-167579102	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1018193	chr6:167491589-167797294	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv538544	chr6:167491589-167797294	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv469673	chr6:167500376-167658532	Flanking Active TSS Genic enhancers Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv482439	chr6:167500376-167658532	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv2758094	chr6:167501204-167845935	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	esv2759492	chr6:167501204-168176733	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv482873	chr6:167521620-167679133	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167534000-167573400	Weak transcription	Right Atrium	heart
2	chr6:167543400-167565000	Weak transcription	Spleen	Spleen
3	chr6:167550600-167560400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:167552800-167560800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:167555800-167559800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:167556000-167560600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:167558400-167560600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:167558600-167562000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:167558800-167560200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:167559000-167561800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:167559000-167562000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:167559200-167560000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:167559400-167560000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:167559400-167560200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
15	chr6:167559400-167560200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:167559400-167562000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr6:167559600-167559800	Active TSS	Monocytes-CD14+_RO01746	blood
18	chr6:167559600-167560000	Active TSS	Duodenum Mucosa	Duodenum
19	chr6:167559600-167560000	Active TSS	Fetal Brain Female	brain
20	chr6:167559600-167560200	Active TSS	Primary B cells from peripheral blood	blood
21	chr6:167559600-167560600	Active TSS	Primary hematopoietic stem cells	blood
22	chr6:167559600-167560800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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